Difference between revisions of "HOMOCYSMETB12-RXN"

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(Created page with "Category:reaction == Reaction 2.6.1.28-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.28 ec-2.6.1.28] * direction: ** reversible == Reaction formula == * 1 PH...")
(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13] * direction: ** left-to-right * common-name: ** methi...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.6.1.28-RXN ==
+
== Reaction HOMOCYSMETB12-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.28 ec-2.6.1.28]
+
** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** methionine synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHENYL-PYRUVATE]][c] '''+''' 1 [[TRP]][c] '''<=>''' 1 [[INDOLE_PYRUVATE]][c] '''+''' 1 [[PHE]][c]
+
* 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS07715]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS05815]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7520]], terrequinone A biosynthesis:
+
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis:
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5081]], L-tryptophan degradation VIII (to tryptophol):
+
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II:
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7977]], L-methionine biosynthesis IV (archaea):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[HSERMETANA-PWY]], L-methionine biosynthesis III:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13741 13741]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01376 R01376]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
−
{{#set: ec-number=ec-2.6.1.28}}
+
* UNIPROT:
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/O33259 O33259]
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
−
{{#set: reconstruction tool=meneco}}
+
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
−
{{#set: reconstruction comment=added for gapfilling}}
+
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
** [http://www.uniprot.org/uniprot/P13009 P13009]
 +
{{#set: ec-number=ec-2.1.1.13}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=methionine synthase}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=7}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction HOMOCYSMETB12-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • methionine synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis:
    • 9 reactions found over 9 reactions in the full pathway
  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-3841, folate transformations II:
    • 10 reactions found over 11 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7977, L-methionine biosynthesis IV (archaea):
    • 3 reactions found over 4 reactions in the full pathway
  • HSERMETANA-PWY, L-methionine biosynthesis III:
    • 3 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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