Difference between revisions of "ExchangeSeed-ATP"

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(Created page with "Category:reaction == Reaction 2-ISOPROPYLMALATESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.13 ec-2.3.3.13] * direction: ** left-to-right * common-name: *...")
(Created page with "Category:reaction == Reaction ExchangeSeed-ATP == * direction: ** reversible == Reaction formula == * 1.0 ATP[C-BOUNDARY] '''<=>''' 1.0 ATP[e] == Gene(s) associate...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction 2-ISOPROPYLMALATESYN-RXN ==
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== Reaction ExchangeSeed-ATP ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.3.3.13 ec-2.3.3.13]
 
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** pyruvate carboxyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
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* 1.0 [[ATP]][C-BOUNDARY] '''<=>''' 1.0 [[ATP]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS00040]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS13820]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS11850]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21525 21525]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
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{{#set: reconstruction category=manual}}
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* UNIPROT:
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{{#set: reconstruction tool=curation}}
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** [http://www.uniprot.org/uniprot/P06208 P06208]
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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** [http://www.uniprot.org/uniprot/Q58595 Q58595]
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{{#set: reconstruction source=import_from_medium}}
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** [http://www.uniprot.org/uniprot/P09151 P09151]
 
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** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
 
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** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
 
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** [http://www.uniprot.org/uniprot/Q58787 Q58787]
 
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** [http://www.uniprot.org/uniprot/P94565 P94565]
 
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** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
 
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** [http://www.uniprot.org/uniprot/Q02141 Q02141]
 
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** [http://www.uniprot.org/uniprot/P48575 P48575]
 
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** [http://www.uniprot.org/uniprot/O86511 O86511]
 
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{{#set: ec-number=ec-2.3.3.13}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=pyruvate carboxyltransferase}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
 

Latest revision as of 11:16, 17 October 2022

Reaction ExchangeSeed-ATP

  • direction:
    • reversible

Reaction formula

  • 1.0 ATP[C-BOUNDARY] <=> 1.0 ATP[e]

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=ExchangeSeed-ATP&oldid=92348"