Difference between revisions of "2-HALOACID-DEHALOGENASE-RXN"

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(Created page with "Category:reaction == Reaction ACETATEKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15] ** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1] * di...")
(Created page with "Category:reaction == Reaction 2-HALOACID-DEHALOGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.8.1.10 ec-3.8.1.10] ** [http://enzyme.expasy.org/EC/3.8.1.2 ec-...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACETATEKIN-RXN ==
+
== Reaction 2-HALOACID-DEHALOGENASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15]
+
** [http://enzyme.expasy.org/EC/3.8.1.10 ec-3.8.1.10]
−
** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1]
+
** [http://enzyme.expasy.org/EC/3.8.1.2 ec-3.8.1.2]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** acetate kinase
+
** haloacid dehalogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ACETYL-P]][c] '''+''' 1 [[ADP]][c]
+
* 1 [[S-2-Haloacids]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2R-Hydroxy-Fatty-Acids]][c] '''+''' 1 [[Halide-Anions]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS04650]]
+
* Gene: [[FSU_RS12230]]
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS09410]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[FISUC_RS04815]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FISUC_RS10270]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS07485]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
−
** '''9''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY0-1477]], ethanolamine utilization:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''8''' reactions found over '''24''' reactions in the full pathway
 
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
−
** '''3''' reactions found over '''17''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''14''' reactions found over '''16''' reactions in the full pathway
 
−
* [[METH-ACETATE-PWY]], methanogenesis from acetate:
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P161-PWY]], acetylene degradation (anaerobic):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P163-PWY]], L-lysine fermentation to acetate and butanoate:
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''13''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY0-1312]], acetate and ATP formation from acetyl-CoA I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-8015]], glycine degradation (Stickland reaction):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5482]], pyruvate fermentation to acetate II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P3-PWY]], gallate degradation III (anaerobic):
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5485]], pyruvate fermentation to acetate IV:
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11355 11355]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11193 11193]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00315 R00315]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03830 R03830]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JTM0 Q9JTM0]
+
** [http://www.uniprot.org/uniprot/P24069 P24069]
−
** [http://www.uniprot.org/uniprot/P38502 P38502]
+
** [http://www.uniprot.org/uniprot/P24070 P24070]
−
** [http://www.uniprot.org/uniprot/P37877 P37877]
+
** [http://www.uniprot.org/uniprot/Q59728 Q59728]
−
** [http://www.uniprot.org/uniprot/Q9PPL8 Q9PPL8]
+
** [http://www.uniprot.org/uniprot/Q59168 Q59168]
−
** [http://www.uniprot.org/uniprot/Q9CE36 Q9CE36]
+
{{#set: ec-number=ec-3.8.1.2|ec-3.8.1.10}}
−
** [http://www.uniprot.org/uniprot/P47599 P47599]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9CE35 Q9CE35]
+
{{#set: common-name=haloacid dehalogenase}}
−
** [http://www.uniprot.org/uniprot/Q9JT07 Q9JT07]
 
−
** [http://www.uniprot.org/uniprot/P44406 P44406]
 
−
** [http://www.uniprot.org/uniprot/P0A6A3 P0A6A3]
 
−
** [http://www.uniprot.org/uniprot/P73162 P73162]
 
−
{{#set: ec-number=ec-2.7.2.1|ec-2.7.2.15}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=acetate kinase}}
 
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=14}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|bifidobacterium|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction 2-HALOACID-DEHALOGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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