Difference between revisions of "2-HALOACID-DEHALOGENASE-RXN"

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(Created page with "Category:reaction == Reaction RXN1G-499 == * common-name: ** 3-oxo-lignoceroyl-[acyl-carrier protein] synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3...")
(Created page with "Category:reaction == Reaction 2-HALOACID-DEHALOGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.8.1.10 ec-3.8.1.10] ** [http://enzyme.expasy.org/EC/3.8.1.2 ec-...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN1G-499 ==
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== Reaction 2-HALOACID-DEHALOGENASE-RXN ==
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* common-name:
 
−
** 3-oxo-lignoceroyl-[acyl-carrier protein] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/3.8.1.10 ec-3.8.1.10]
 +
** [http://enzyme.expasy.org/EC/3.8.1.2 ec-3.8.1.2]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** haloacid dehalogenase
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[Behenoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-lignoceroyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
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* 1 [[S-2-Haloacids]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2R-Hydroxy-Fatty-Acids]][c] '''+''' 1 [[Halide-Anions]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS01255]]
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* Gene: [[FSU_RS12230]]
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** Category: [[manual]]
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** Category: [[annotation]]
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*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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* Gene: [[FSU_RS01605]]
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* Gene: [[FISUC_RS04815]]
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** Category: [[manual]]
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** Category: [[annotation]]
−
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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* Gene: [[FSU_RS01270]]
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* Gene: [[FISUC_RS10270]]
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** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWYG-321]], mycolate biosynthesis:
 
−
** '''12''' reactions found over '''182''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=3-oxo-lignoceroyl-[acyl-carrier protein] synthase}}
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* RHEA:
−
{{#set: ec-number=ec-2.3.1.41}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11193 11193]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03830 R03830]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P24069 P24069]
 +
** [http://www.uniprot.org/uniprot/P24070 P24070]
 +
** [http://www.uniprot.org/uniprot/Q59728 Q59728]
 +
** [http://www.uniprot.org/uniprot/Q59168 Q59168]
 +
{{#set: ec-number=ec-3.8.1.2|ec-3.8.1.10}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 +
{{#set: common-name=haloacid dehalogenase}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
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{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=add_expert_reactions}}
+
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction 2-HALOACID-DEHALOGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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