Difference between revisions of "6.3.1.4-RXN"

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(Created page with "Category:reaction == Reaction RXN-11479 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] * dir...")
(Created page with "Category:reaction == Reaction 6.3.1.4-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.1.4 ec-6.3.1.4] * direction: ** left-to-right == Reaction formula == * 1 AM...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-11479 ==
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== Reaction 6.3.1.4-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/6.3.1.4 ec-6.3.1.4]
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
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* common-name:
 
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** beta-ketoacyl-acp synthase ii
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[Glutaryl-ACP-methyl-esters]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Ketopimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS01605]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FISUC_RS15210]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FISUC_RS15410]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS01400]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I:
 
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** '''11''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
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* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14197 14197]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00482 R00482]
 +
{{#set: ec-number=ec-6.3.1.4}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=beta-ketoacyl-acp synthase ii}}
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{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=4}}
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{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
 

Latest revision as of 11:16, 17 October 2022

Reaction 6.3.1.4-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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