Difference between revisions of "2.6.1.70-RXN"

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(Created page with "Category:reaction == Reaction RXN-9537 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [http...")
(Created page with "Category:reaction == Reaction 2.6.1.70-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.70 ec-2.6.1.70] * direction: ** reversible == Reaction formula == * 1 L-...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9537 ==
+
== Reaction 2.6.1.70-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.6.1.70 ec-2.6.1.70]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** 3-hydroxyacyl-acp dehydratase fabz
 
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* synonymous:
 
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** (3r)-hydroxymyristoyl-acp dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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* 1 [[L-ASPARTATE]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PHE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[FSU_RS01735]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS01730]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS14115]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS00310]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS00290]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
 
−
** '''20''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
 
−
** '''22''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.3.1.85|ec-4.2.1.59|ec-2.3.1.86}}
+
* RHEA:
−
{{#set: direction=left-to-right}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14100 14100]
−
{{#set: common-name=3-hydroxyacyl-acp dehydratase fabz}}
+
* LIGAND-RXN:
−
{{#set: synonymous=(3r)-hydroxymyristoyl-acp dehydratase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00695 R00695]
−
{{#set: nb gene associated=5}}
+
{{#set: ec-number=ec-2.6.1.70}}
−
{{#set: nb pathway associated=2}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb gene associated=0}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}
 +
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}

Latest revision as of 11:17, 17 October 2022

Reaction 2.6.1.70-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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