Difference between revisions of "4.1.99.4-RXN"

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(Created page with "Category:reaction == Reaction HISTCYCLOHYD-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.19 ec-3.5.4.19] * direction: ** left-to-right * common-name: ** phosph...")
 
(Created page with "Category:reaction == Reaction 4.1.99.4-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.99.7 ec-3.5.99.7] * direction: ** left-to-right == Reaction formula == * 1 [...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HISTCYCLOHYD-RXN ==
+
== Reaction 4.1.99.4-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.19 ec-3.5.4.19]
+
** [http://enzyme.expasy.org/EC/3.5.99.7 ec-3.5.99.7]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** phosphoribosyl-amp cyclohydrolase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c]
+
* 1 [[CPD-68]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS15315]]
+
* Gene: [[FSU_RS15290]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
−
* Gene: [[FSU_RS01510]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20050 20050]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16934 16934]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04037 R04037]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00997 R00997]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44434 P44434]
+
** [http://www.uniprot.org/uniprot/Q9V2L2 Q9V2L2]
−
** [http://www.uniprot.org/uniprot/Q9JVH6 Q9JVH6]
+
** [http://www.uniprot.org/uniprot/Q9WY68 Q9WY68]
−
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
+
** [http://www.uniprot.org/uniprot/P30297 P30297]
−
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
+
** [http://www.uniprot.org/uniprot/Q7M523 Q7M523]
−
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
+
** [http://www.uniprot.org/uniprot/Q9URX3 Q9URX3]
−
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
+
{{#set: ec-number=ec-3.5.99.7}}
−
** [http://www.uniprot.org/uniprot/Q58825 Q58825]
 
−
** [http://www.uniprot.org/uniprot/O28329 O28329]
 
−
** [http://www.uniprot.org/uniprot/O34912 O34912]
 
−
** [http://www.uniprot.org/uniprot/P0A5B3 P0A5B3]
 
−
** [http://www.uniprot.org/uniprot/Q9HUB7 Q9HUB7]
 
−
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
 
−
** [http://www.uniprot.org/uniprot/Q9K0H5 Q9K0H5]
 
−
** [http://www.uniprot.org/uniprot/O67780 O67780]
 
−
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
 
−
** [http://www.uniprot.org/uniprot/Q50837 Q50837]
 
−
** [http://www.uniprot.org/uniprot/Q53158 Q53158]
 
−
** [http://www.uniprot.org/uniprot/P45353 P45353]
 
−
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
 
−
** [http://www.uniprot.org/uniprot/P00815 P00815]
 
−
** [http://www.uniprot.org/uniprot/P07685 P07685]
 
−
** [http://www.uniprot.org/uniprot/O59667 O59667]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C3 Q9X7C3]
 
−
** [http://www.uniprot.org/uniprot/O82768 O82768]
 
−
** [http://www.uniprot.org/uniprot/P10367 P10367]
 
−
** [http://www.uniprot.org/uniprot/P06989 P06989]
 
−
</div>
 
−
{{#set: ec-number=ec-3.5.4.19}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoribosyl-amp cyclohydrolase}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=add_expert_reactions}}
−
{{#set: reconstruction source=bifidobacterium|faecalibacterium|plantarum|genome|ecoli|bthetaiotaomicron}}
 

Latest revision as of 11:17, 17 October 2022

Reaction 4.1.99.4-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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