Difference between revisions of "3.1.26.4-RXN"

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(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37] * direction: ** left-to-right == Reaction formula ==...")
 
(Created page with "Category:reaction == Reaction 3.1.26.4-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.4 ec-3.1.26.4] * direction: ** left-to-right * common-name: ** ribonuclea...")
 
(15 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UROGENDECARBOX-RXN ==
+
== Reaction 3.1.26.4-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
+
** [http://enzyme.expasy.org/EC/3.1.26.4 ec-3.1.26.4]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** ribonuclease h
 +
** ribonuclease hii
 
== Reaction formula ==
 
== Reaction formula ==
−
* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
+
* 1 [[RNA-DNA-hybrids]][c] '''+''' n [[WATER]][c] '''=>''' 1 [[DNA-Holder]][c] '''+''' n [[Nucleoside-Monophosphates]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS15575]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS01150]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS13600]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS14960]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[HEMESYN2-PWY]], heme b biosynthesis II (anaerobic):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06132 P06132]
+
** [http://www.uniprot.org/uniprot/P52975 P52975]
−
** [http://www.uniprot.org/uniprot/P16891 P16891]
+
** [http://www.uniprot.org/uniprot/Q9CDG3 Q9CDG3]
−
** [http://www.uniprot.org/uniprot/P32395 P32395]
+
** [http://www.uniprot.org/uniprot/Q9PM39 Q9PM39]
−
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
+
** [http://www.uniprot.org/uniprot/Q9JX40 Q9JX40]
−
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
+
** [http://www.uniprot.org/uniprot/P43807 P43807]
−
** [http://www.uniprot.org/uniprot/P29680 P29680]
+
** [http://www.uniprot.org/uniprot/P43808 P43808]
−
** [http://www.uniprot.org/uniprot/P32347 P32347]
+
** [http://www.uniprot.org/uniprot/Q9PJA1 Q9PJA1]
−
** [http://www.uniprot.org/uniprot/P32920 P32920]
+
** [http://www.uniprot.org/uniprot/Q9CG17 Q9CG17]
−
** [http://www.uniprot.org/uniprot/P54224 P54224]
+
** [http://www.uniprot.org/uniprot/Q9JTD9 Q9JTD9]
−
** [http://www.uniprot.org/uniprot/O81220 O81220]
+
** [http://www.uniprot.org/uniprot/Q57599 Q57599]
−
** [http://www.uniprot.org/uniprot/P70697 P70697]
+
** [http://www.uniprot.org/uniprot/O44114 O44114]
−
{{#set: ec-number=ec-4.1.1.37}}
+
** [http://www.uniprot.org/uniprot/P0A7Y4 P0A7Y4]
 +
** [http://www.uniprot.org/uniprot/P10442 P10442]
 +
** [http://www.uniprot.org/uniprot/P13319 P13319]
 +
** [http://www.uniprot.org/uniprot/Q7LYY8 Q7LYY8]
 +
** [http://www.uniprot.org/uniprot/P0A2B9 P0A2B9]
 +
** [http://www.uniprot.org/uniprot/Q04740 Q04740]
 +
** [http://www.uniprot.org/uniprot/Q49050 Q49050]
 +
** [http://www.uniprot.org/uniprot/O69014 O69014]
 +
** [http://www.uniprot.org/uniprot/Q54222 Q54222]
 +
</div>
 +
{{#set: ec-number=ec-3.1.26.4}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=ribonuclease hii|ribonuclease h}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb gene associated=4}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=reactions_add_gp}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:18, 17 October 2022

Reaction 3.1.26.4-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • ribonuclease h
    • ribonuclease hii

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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