Difference between revisions of "1.2.7.8-RXN"

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(Created page with "Category:reaction == Reaction RXN-9623 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatty...")
(Created page with "Category:reaction == Reaction 1.2.7.8-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.7.8 ec-1.2.7.8] * direction: ** left-to-right * common-name: ** thiamine pyro...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9623 ==
+
== Reaction 1.2.7.8-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.2.7.8 ec-1.2.7.8]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** long-chain fatty acid--coa ligase
+
** thiamine pyrophosphate-binding protein
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PALMITATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[INDOLE_PYRUVATE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[S-2-INDOL-3-YLACETYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS14015]]
+
* Gene: [[FISUC_RS06185]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS12045]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5972]], stearate biosynthesis I (animals and fungi):
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
 
−
** '''22''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07161 R07161]
−
{{#set: ec-number=ec-6.2.1.3}}
+
{{#set: ec-number=ec-1.2.7.8}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid--coa ligase}}
+
{{#set: common-name=thiamine pyrophosphate-binding protein}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=faecalibacterium|genome|bthetaiotaomicron}}
+
{{#set: reconstruction source=fibrobacter_succinogenes2}}

Latest revision as of 11:18, 17 October 2022

Reaction 1.2.7.8-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • thiamine pyrophosphate-binding protein

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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