Difference between revisions of "RXN0-383"

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(Created page with "Category:reaction == Reaction 2.5.1.19-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19] * direction: ** reversible * common-name: ** 3-phosphoshik...")
(Created page with "Category:reaction == Reaction RXN0-383 == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9] ** [http://enzyme.expasy.org/EC/3.6.1.65 ec-3.6.1.65] * directio...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.5.1.19-RXN ==
+
== Reaction RXN0-383 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19]
+
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 +
** [http://enzyme.expasy.org/EC/3.6.1.65 ec-3.6.1.65]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-phosphoshikimate 1-carboxyvinyltransferase
+
** nucleoside triphosphate pyrophosphohydrolase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[SHIKIMATE-5P]][c] '''<=>''' 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS10040]]
+
* Gene: [[FSU_RS06495]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FISUC_RS02370]]
−
* Gene: [[FSU_RS14855]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS08110]]
+
* Gene: [[FSU_RS04260]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS12880]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21259 21259]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27763 27763]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03460 R03460]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00515 R00515]
−
* UNIPROT:
+
{{#set: ec-number=ec-3.6.1.9|ec-3.6.1.65}}
−
** [http://www.uniprot.org/uniprot/P22299 P22299]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
{{#set: common-name=nucleoside triphosphate pyrophosphohydrolase}}
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P22487 P22487]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P52312 P52312]
 
−
** [http://www.uniprot.org/uniprot/Q9JTT3 Q9JTT3]
 
−
** [http://www.uniprot.org/uniprot/Q03421 Q03421]
 
−
** [http://www.uniprot.org/uniprot/P19786 P19786]
 
−
** [http://www.uniprot.org/uniprot/P17688 P17688]
 
−
** [http://www.uniprot.org/uniprot/P24497 P24497]
 
−
** [http://www.uniprot.org/uniprot/P23981 P23981]
 
−
** [http://www.uniprot.org/uniprot/P23281 P23281]
 
−
** [http://www.uniprot.org/uniprot/Q04570 Q04570]
 
−
** [http://www.uniprot.org/uniprot/P43905 P43905]
 
−
** [http://www.uniprot.org/uniprot/Q59975 Q59975]
 
−
** [http://www.uniprot.org/uniprot/P12421 P12421]
 
−
** [http://www.uniprot.org/uniprot/P07637 P07637]
 
−
** [http://www.uniprot.org/uniprot/P19688 P19688]
 
−
** [http://www.uniprot.org/uniprot/P0A6D3 P0A6D3]
 
−
** [http://www.uniprot.org/uniprot/P11043 P11043]
 
−
</div>
 
−
{{#set: ec-number=ec-2.5.1.19}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-phosphoshikimate 1-carboxyvinyltransferase}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=plantarum|bthetaiotaomicron|genome|bifidobacterium|faecalibacterium|ecoli}}
+
{{#set: reconstruction source=ecoli|fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:18, 17 October 2022

Reaction RXN0-383

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside triphosphate pyrophosphohydrolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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