Difference between revisions of "CITSYN-RXN"
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(Created page with "{{#ask: Category:organism | ?nb reaction associated | ?nb gene associated | ?nb pathway associated |sort=nb reaction associated |order=descending }}") |
(Created page with "Category:reaction == Reaction CITSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] ** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] * direct...") |
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− | + | [[Category:reaction]] | |
− | | | + | == Reaction CITSYN-RXN == |
− | | | + | * ec-number: |
− | + | ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] | |
− | + | ** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] | |
− | + | * direction: | |
− | }} | + | ** left-to-right |
+ | * common-name: | ||
+ | ** citrate synthase | ||
+ | * synonymous: | ||
+ | ** condensing enzyme | ||
+ | ** citrate synthesis | ||
+ | == Reaction formula == | ||
+ | * 1 [[ACETYL-COA]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] | ||
+ | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[FSU_RS05160]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[FISUC_RS03270]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: | ||
+ | ** '''14''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: | ||
+ | ** '''9''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VIII (Helicobacter): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): | ||
+ | ** '''8''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): | ||
+ | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5690]], TCA cycle II (plants and fungi): | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | </div> | ||
+ | == Reconstruction information == | ||
+ | * category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351] | ||
+ | * PIR: | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0] | ||
+ | ** [http://www.uniprot.org/uniprot/P31660 P31660] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6] | ||
+ | ** [http://www.uniprot.org/uniprot/P39120 P39120] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5] | ||
+ | ** [http://www.uniprot.org/uniprot/P20902 P20902] | ||
+ | ** [http://www.uniprot.org/uniprot/P51033 P51033] | ||
+ | ** [http://www.uniprot.org/uniprot/P39119 P39119] | ||
+ | ** [http://www.uniprot.org/uniprot/P42457 P42457] | ||
+ | ** [http://www.uniprot.org/uniprot/P18789 P18789] | ||
+ | ** [http://www.uniprot.org/uniprot/P20903 P20903] | ||
+ | ** [http://www.uniprot.org/uniprot/P51038 P51038] | ||
+ | ** [http://www.uniprot.org/uniprot/P34085 P34085] | ||
+ | ** [http://www.uniprot.org/uniprot/P34575 P34575] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43175 Q43175] | ||
+ | ** [http://www.uniprot.org/uniprot/P43635 P43635] | ||
+ | ** [http://www.uniprot.org/uniprot/O24259 O24259] | ||
+ | ** [http://www.uniprot.org/uniprot/O32705 O32705] | ||
+ | ** [http://www.uniprot.org/uniprot/P00890 P00890] | ||
+ | ** [http://www.uniprot.org/uniprot/P08679 P08679] | ||
+ | ** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q47237 Q47237] | ||
+ | ** [http://www.uniprot.org/uniprot/P20115 P20115] | ||
+ | ** [http://www.uniprot.org/uniprot/P26491 P26491] | ||
+ | ** [http://www.uniprot.org/uniprot/P00889 P00889] | ||
+ | ** [http://www.uniprot.org/uniprot/P20901 P20901] | ||
+ | ** [http://www.uniprot.org/uniprot/P09948 P09948] | ||
+ | ** [http://www.uniprot.org/uniprot/P21553 P21553] | ||
+ | </div> | ||
+ | {{#set: ec-number=ec-2.3.3.16|ec-2.3.3.1}} | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=citrate synthase}} | ||
+ | {{#set: synonymous=citrate synthesis|condensing enzyme}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=13}} | ||
+ | {{#set: reconstruction category=annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}} |
Latest revision as of 11:18, 17 October 2022
Contents
Reaction CITSYN-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- citrate synthase
- synonymous:
- condensing enzyme
- citrate synthesis
Reaction formula
- 1 ACETYL-COA[c] + 1 OXALACETIC_ACID[c] + 1 WATER[c] => 1 CIT[c] + 1 CO-A[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: FSU_RS05160
- Category: annotation
- Source: fibrobacter_succinogenes1, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FISUC_RS03270
- Category: annotation
- Source: fibrobacter_succinogenes2, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- FERMENTATION-PWY, mixed acid fermentation:
- 14 reactions found over 16 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle:
- 4 reactions found over 6 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY-6728, methylaspartate cycle:
- 9 reactions found over 19 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered):
- 8 reactions found over 8 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic):
- 10 reactions found over 10 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 11 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (Helicobacter):
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
- 9 reactions found over 12 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 8 reactions found over 11 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers):
- 9 reactions found over 9 reactions in the full pathway
- PWY66-398, TCA cycle III (animals):
- 7 reactions found over 11 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi):
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: annotation; source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- category: annotation; source: fibrobacter_succinogenes2; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- PIR:
- UNIPROT: