Difference between revisions of "CITSYN-RXN"

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(Created page with "Category:reaction == Reaction 3.4.21.89-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.21.89 ec-3.4.21.89] * direction: ** left-to-right * common-name: ** signal...")
(Created page with "Category:reaction == Reaction CITSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16] ** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1] * direct...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.21.89-RXN ==
+
== Reaction CITSYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.21.89 ec-3.4.21.89]
+
** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16]
 +
** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** signal peptidase i
+
** citrate synthase
 +
* synonymous:
 +
** condensing enzyme
 +
** citrate synthesis
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Peptides-with-Leader-Sequence]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Leader-Sequences]][c] '''+''' 1 [[Peptides-holder]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS10115]]
+
* Gene: [[FSU_RS05160]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS08185]]
+
* Gene: [[FISUC_RS03270]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
Line 22: Line 54:
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9RUF9 Q9RUF9]
+
** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
−
** [http://www.uniprot.org/uniprot/Q9ZE32 Q9ZE32]
+
** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
−
** [http://www.uniprot.org/uniprot/Q9CDG2 Q9CDG2]
+
** [http://www.uniprot.org/uniprot/P31660 P31660]
−
** [http://www.uniprot.org/uniprot/Q9KPB1 Q9KPB1]
+
** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
−
** [http://www.uniprot.org/uniprot/Q9PBA0 Q9PBA0]
+
** [http://www.uniprot.org/uniprot/P39120 P39120]
−
** [http://www.uniprot.org/uniprot/Q57708 Q57708]
+
** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
−
** [http://www.uniprot.org/uniprot/O67088 O67088]
+
** [http://www.uniprot.org/uniprot/P20902 P20902]
−
** [http://www.uniprot.org/uniprot/Q9JV66 Q9JV66]
+
** [http://www.uniprot.org/uniprot/P51033 P51033]
−
** [http://www.uniprot.org/uniprot/Q9PP67 Q9PP67]
+
** [http://www.uniprot.org/uniprot/P39119 P39119]
−
** [http://www.uniprot.org/uniprot/Q9I5G7 Q9I5G7]
+
** [http://www.uniprot.org/uniprot/P42457 P42457]
−
** [http://www.uniprot.org/uniprot/Q8FF16 Q8FF16]
+
** [http://www.uniprot.org/uniprot/P18789 P18789]
−
** [http://www.uniprot.org/uniprot/Q8XA33 Q8XA33]
+
** [http://www.uniprot.org/uniprot/P20903 P20903]
−
** [http://www.uniprot.org/uniprot/P41026 P41026]
+
** [http://www.uniprot.org/uniprot/P51038 P51038]
−
** [http://www.uniprot.org/uniprot/P41027 P41027]
+
** [http://www.uniprot.org/uniprot/P34085 P34085]
−
** [http://www.uniprot.org/uniprot/P37943 P37943]
+
** [http://www.uniprot.org/uniprot/P34575 P34575]
−
** [http://www.uniprot.org/uniprot/Q57350 Q57350]
+
** [http://www.uniprot.org/uniprot/Q43175 Q43175]
−
** [http://www.uniprot.org/uniprot/Q7M0V9 Q7M0V9]
+
** [http://www.uniprot.org/uniprot/P43635 P43635]
−
** [http://www.uniprot.org/uniprot/P0A1W2 P0A1W2]
+
** [http://www.uniprot.org/uniprot/O24259 O24259]
−
** [http://www.uniprot.org/uniprot/P26844 P26844]
+
** [http://www.uniprot.org/uniprot/O32705 O32705]
−
** [http://www.uniprot.org/uniprot/P28628 P28628]
+
** [http://www.uniprot.org/uniprot/P00890 P00890]
−
** [http://www.uniprot.org/uniprot/P41025 P41025]
+
** [http://www.uniprot.org/uniprot/P08679 P08679]
−
** [http://www.uniprot.org/uniprot/Q51876 Q51876]
+
** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
−
** [http://www.uniprot.org/uniprot/Q52697 Q52697]
+
** [http://www.uniprot.org/uniprot/Q47237 Q47237]
−
** [http://www.uniprot.org/uniprot/Q45225 Q45225]
+
** [http://www.uniprot.org/uniprot/P20115 P20115]
−
** [http://www.uniprot.org/uniprot/P72660 P72660]
+
** [http://www.uniprot.org/uniprot/P26491 P26491]
−
** [http://www.uniprot.org/uniprot/P73157 P73157]
+
** [http://www.uniprot.org/uniprot/P00889 P00889]
−
** [http://www.uniprot.org/uniprot/O69884 O69884]
+
** [http://www.uniprot.org/uniprot/P20901 P20901]
−
** [http://www.uniprot.org/uniprot/P00803 P00803]
+
** [http://www.uniprot.org/uniprot/P09948 P09948]
 +
** [http://www.uniprot.org/uniprot/P21553 P21553]
 
</div>
 
</div>
−
{{#set: ec-number=ec-3.4.21.89}}
+
{{#set: ec-number=ec-2.3.3.16|ec-2.3.3.1}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=signal peptidase i}}
+
{{#set: common-name=citrate synthase}}
 +
{{#set: synonymous=citrate synthesis|condensing enzyme}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=13}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
 
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:18, 17 October 2022

Reaction CITSYN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • citrate synthase
  • synonymous:
    • condensing enzyme
    • citrate synthesis

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FERMENTATION-PWY, mixed acid fermentation:
    • 14 reactions found over 16 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (Helicobacter):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=CITSYN-RXN&oldid=93217"