Difference between revisions of "DEOXYGUANPHOSPHOR-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DEOXYGUANPHOSPHOR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1] * direction: ** reversible == Reaction formula == *...")
 
(15 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTDEHYD-RXN ==
+
== Reaction DEOXYGUANPHOSPHOR-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.4 ec-1.4.1.4]
+
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** nadph-dependent glutamate synthase
 
−
** nadp-specific glutamate dehydrogenase
 
−
** glutamate synthase large subunit
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DEOXYGUANOSINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''+''' 1 [[GUANINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[FSU_RS11005]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS06385]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS14130]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS09065]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS04495]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS00325]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUTSYNIII-PWY]], L-glutamate biosynthesis III:
+
* [[PWY-7179]], purine deoxyribonucleosides degradation I:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5675]], nitrate reduction V (assimilatory):
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY490-3]], nitrate reduction VI (assimilatory):
 
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7179-1]], purine deoxyribonucleosides degradation II:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11615 11615]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27741 27741]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00248 R00248]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01969 R01969]
−
* UNIPROT:
+
{{#set: ec-number=ec-2.4.2.1}}
−
** [http://www.uniprot.org/uniprot/P07262 P07262]
 
−
** [http://www.uniprot.org/uniprot/P15111 P15111]
 
−
** [http://www.uniprot.org/uniprot/P28724 P28724]
 
−
** [http://www.uniprot.org/uniprot/P43793 P43793]
 
−
** [http://www.uniprot.org/uniprot/Q9JT56 Q9JT56]
 
−
** [http://www.uniprot.org/uniprot/P00370 P00370]
 
−
** [http://www.uniprot.org/uniprot/P00369 P00369]
 
−
** [http://www.uniprot.org/uniprot/P29507 P29507]
 
−
** [http://www.uniprot.org/uniprot/P28998 P28998]
 
−
** [http://www.uniprot.org/uniprot/P29051 P29051]
 
−
** [http://www.uniprot.org/uniprot/P31026 P31026]
 
−
** [http://www.uniprot.org/uniprot/P39475 P39475]
 
−
** [http://www.uniprot.org/uniprot/P39708 P39708]
 
−
** [http://www.uniprot.org/uniprot/P54387 P54387]
 
−
** [http://www.uniprot.org/uniprot/P54386 P54386]
 
−
** [http://www.uniprot.org/uniprot/P95544 P95544]
 
−
** [http://www.uniprot.org/uniprot/P78804 P78804]
 
−
</div>
 
−
{{#set: ec-number=ec-1.4.1.4}}
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=nadp-specific glutamate dehydrogenase|glutamate synthase large subunit|nadph-dependent glutamate synthase}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}
−
{{#set: reconstruction source=faecalibacterium|bifidobacterium|ecoli|genome|plantarum|bthetaiotaomicron}}
 

Latest revision as of 11:18, 17 October 2022

Reaction DEOXYGUANPHOSPHOR-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7179, purine deoxyribonucleosides degradation I:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7179-1, purine deoxyribonucleosides degradation II:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=DEOXYGUANPHOSPHOR-RXN&oldid=93296"