Difference between revisions of "FISUC RS10855"

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(Created page with "Category:reaction == Reaction 3PGAREARR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.4.2.12 ec-5.4.2.12] * direction: ** reversible * common-name: ** 2,3-bisphosp...")
(Created page with "Category:gene == Gene FISUC_RS10855 == * transcription-direction: ** positive * centisome-position: ** 69.5032 * left-end-position: ** 2670754 * right-end-position: **...")
 
(10 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 3PGAREARR-RXN ==
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== Gene FISUC_RS10855 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/5.4.2.12 ec-5.4.2.12]
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** positive
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* direction:
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* centisome-position:
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** reversible
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** 69.5032   
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* common-name:
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* left-end-position:
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** 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
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** 2670754
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== Reaction formula ==
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* right-end-position:
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* 1 [[2-PG]][c] '''<=>''' 1 [[G3P]][c]
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** 2673084
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS03850]]
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* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[1.17.4.2-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS05745]]
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* [[RIBONUCLEOSIDE-TRIP-REDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN0-723]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN0-724]]
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== Pathway(s)  ==
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** Category: [[annotation]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7124]], ethylene biosynthesis V (engineered):
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* [[RXN0-745]]
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** '''7''' reactions found over '''8''' reactions in the full pathway
+
** Category: [[annotation]]
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* [[PWY-1042]], glycolysis IV (plant cytosol):
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[RXN0-746]]
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
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** Category: [[annotation]]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
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== Pathway(s) associated ==
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** '''10''' reactions found over '''8''' reactions in the full pathway
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* [[PWY0-166]]
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* [[P341-PWY]], glycolysis V (Pyrococcus):
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** '''11''' reactions found over '''13''' reactions in the full pathway
−
** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7187]]
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* [[GLUCONEO-PWY]], gluconeogenesis I:
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7220]]
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** '''10''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7222]]
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** '''11''' reactions found over '''11''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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* [[PWY-7003]], glycerol degradation to butanol:
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{{#set: centisome-position=69.5032    }}
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** '''7''' reactions found over '''6''' reactions in the full pathway
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{{#set: left-end-position=2670754}}
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
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{{#set: right-end-position=2673084}}
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** '''6''' reactions found over '''5''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[P124-PWY]], Bifidobacterium shunt:
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{{#set: nb reaction associated=6}}
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** '''14''' reactions found over '''15''' reactions in the full pathway
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{{#set: nb pathway associated=4}}
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
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** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 
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** '''5''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5723]], Rubisco shunt:
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
</div>
 
−
== Reconstruction information  ==
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15904 15904]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01518 R01518]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P30792 P30792]
 
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** [http://www.uniprot.org/uniprot/P52832 P52832]
 
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** [http://www.uniprot.org/uniprot/P44865 P44865]
 
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** [http://www.uniprot.org/uniprot/P30798 P30798]
 
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** [http://www.uniprot.org/uniprot/P62707 P62707]
 
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** [http://www.uniprot.org/uniprot/P39773 P39773]
 
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** [http://www.uniprot.org/uniprot/P47669 P47669]
 
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** [http://www.uniprot.org/uniprot/Q9CEU3 Q9CEU3]
 
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** [http://www.uniprot.org/uniprot/P56196 P56196]
 
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** [http://www.uniprot.org/uniprot/Q9JTF2 Q9JTF2]
 
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** [http://www.uniprot.org/uniprot/Q9PI71 Q9PI71]
 
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** [http://www.uniprot.org/uniprot/Q9CIM0 Q9CIM0]
 
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** [http://www.uniprot.org/uniprot/P00950 P00950]
 
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** [http://www.uniprot.org/uniprot/P18669 P18669]
 
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** [http://www.uniprot.org/uniprot/P15259 P15259]
 
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** [http://www.uniprot.org/uniprot/P16290 P16290]
 
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** [http://www.uniprot.org/uniprot/P35167 P35167]
 
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** [http://www.uniprot.org/uniprot/P33158 P33158]
 
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** [http://www.uniprot.org/uniprot/Q06464 Q06464]
 
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** [http://www.uniprot.org/uniprot/P36623 P36623]
 
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** [http://www.uniprot.org/uniprot/P35494 P35494]
 
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** [http://www.uniprot.org/uniprot/P37689 P37689]
 
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** [http://www.uniprot.org/uniprot/P35493 P35493]
 
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** [http://www.uniprot.org/uniprot/Q9VAN7 Q9VAN7]
 
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** [http://www.uniprot.org/uniprot/Q42908 Q42908]
 
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** [http://www.uniprot.org/uniprot/Q12326 Q12326]
 
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** [http://www.uniprot.org/uniprot/P53531 P53531]
 
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** [http://www.uniprot.org/uniprot/P51379 P51379]
 
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** [http://www.uniprot.org/uniprot/P75167 P75167]
 
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** [http://www.uniprot.org/uniprot/P72649 P72649]
 
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** [http://www.uniprot.org/uniprot/P74507 P74507]
 
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** [http://www.uniprot.org/uniprot/Q49006 Q49006]
 
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** [http://www.uniprot.org/uniprot/O24246 O24246]
 
−
** [http://www.uniprot.org/uniprot/Q9X519 Q9X519]
 
−
</div>
 
−
{{#set: ec-number=ec-5.4.2.12}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=2,3-bisphosphoglycerate-independent phosphoglycerate mutase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=15}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bthetaiotaomicron|genome|ecoli|faecalibacterium}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS10855

  • transcription-direction:
    • positive
  • centisome-position:
    • 69.5032
  • left-end-position:
    • 2670754
  • right-end-position:
    • 2673084

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-166
    • 11 reactions found over 13 reactions in the full pathway
  • PWY-7187
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7220
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7222
    • 2 reactions found over 4 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS10855&oldid=93546"