Difference between revisions of "FISUC RS10855"

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(Created page with "Category:reaction == Reaction FPPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10] * direction: ** left-to-right == Reaction formula == * 1 D...")
(Created page with "Category:gene == Gene FISUC_RS10855 == * transcription-direction: ** positive * centisome-position: ** 69.5032 * left-end-position: ** 2670754 * right-end-position: **...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction FPPSYN-RXN ==
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== Gene FISUC_RS10855 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 69.5032   
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== Reaction formula ==
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* left-end-position:
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* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
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** 2670754
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS10165]]
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** 2673084
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** Category: [[orthology]]
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== Organism(s) associated with this gene  ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fsucgem]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[1.17.4.2-RXN]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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* Gene: [[FSU_RS06175]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RIBONUCLEOSIDE-TRIP-REDUCT-RXN]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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== Pathway(s)  ==
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7736]], stellatic acid biosynthesis:
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* [[RXN0-723]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN0-724]]
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* [[PWY-6859]], all-trans-farnesol biosynthesis:
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** Category: [[annotation]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7102]], bisabolene biosynthesis (engineered):
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* [[RXN0-745]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-7721]], methyl phomopsenoate biosynthesis:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-746]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 +
* [[PWY0-166]]
 +
** '''11''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7187]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7220]]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7222]]
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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{{#set: transcription-direction=positive}}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=69.5032    }}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: left-end-position=2670754}}
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== External links  ==
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{{#set: right-end-position=2673084}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: organism associated=fsucgem}}
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* RHEA:
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{{#set: nb reaction associated=6}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
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{{#set: nb pathway associated=4}}
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P08524 P08524]
 
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** [http://www.uniprot.org/uniprot/P05369 P05369]
 
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** [http://www.uniprot.org/uniprot/P14324 P14324]
 
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** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
 
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** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
 
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** [http://www.uniprot.org/uniprot/P45204 P45204]
 
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** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
 
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** [http://www.uniprot.org/uniprot/P49350 P49350]
 
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** [http://www.uniprot.org/uniprot/P22939 P22939]
 
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** [http://www.uniprot.org/uniprot/Q08291 Q08291]
 
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** [http://www.uniprot.org/uniprot/P49349 P49349]
 
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
 
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** [http://www.uniprot.org/uniprot/P49351 P49351]
 
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** [http://www.uniprot.org/uniprot/P49352 P49352]
 
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 
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** [http://www.uniprot.org/uniprot/O24241 O24241]
 
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** [http://www.uniprot.org/uniprot/O24242 O24242]
 
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 
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** [http://www.uniprot.org/uniprot/P49353 P49353]
 
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** [http://www.uniprot.org/uniprot/O04882 O04882]
 
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** [http://www.uniprot.org/uniprot/O65004 O65004]
 
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** [http://www.uniprot.org/uniprot/O14230 O14230]
 
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</div>
 
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{{#set: ec-number=ec-2.5.1.10}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|plantarum}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS10855

  • transcription-direction:
    • positive
  • centisome-position:
    • 69.5032
  • left-end-position:
    • 2670754
  • right-end-position:
    • 2673084

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-166
    • 11 reactions found over 13 reactions in the full pathway
  • PWY-7187
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7220
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7222
    • 2 reactions found over 4 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS10855&oldid=93546"