Difference between revisions of "FSU RS09895"

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(Created page with "Category:reaction == Reaction FUMHYDR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2] * direction: ** reversible * common-name: ** fumarate hydrata...")
(Created page with "Category:gene == Gene FSU_RS09895 == * transcription-direction: ** positive * centisome-position: ** 62.165928 * left-end-position: ** 2389039 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction FUMHYDR-RXN ==
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== Gene FSU_RS09895 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2]
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** positive
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* direction:
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* centisome-position:
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** reversible
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** 62.165928   
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* common-name:
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* left-end-position:
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** fumarate hydratase
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** 2389039
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* synonymous:
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* right-end-position:
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** malate dehydration
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** 2391159
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** fumarate hydration
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== Organism(s) associated with this gene  ==
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== Reaction formula ==
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* [[fsucgem]]
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* 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) associated ==
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== Gene(s) associated with this reaction  ==
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* [[2.7.10.1-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[FISUC_RS13370]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS13380]]
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{{#set: transcription-direction=positive}}
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** Category: [[annotation]]
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{{#set: centisome-position=62.165928    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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{{#set: left-end-position=2389039}}
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* Gene: [[FISUC_RS01950]]
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{{#set: right-end-position=2391159}}
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** Category: [[annotation]]
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{{#set: organism associated=fsucgem}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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{{#set: nb reaction associated=1}}
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* Gene: [[FSU_RS03830]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS15355]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS15345]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
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== Pathway(s)  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation:
 
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** '''6''' reactions found over '''4''' reactions in the full pathway
 
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* [[P42-PWY]], incomplete reductive TCA cycle:
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[P23-PWY]], reductive TCA cycle I:
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-5392]], reductive TCA cycle II:
 
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** '''8''' reactions found over '''12''' reactions in the full pathway
 
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* [[P108-PWY]], pyruvate fermentation to propanoate I:
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[TCA]], TCA cycle I (prokaryotic):
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5690]], TCA cycle II (plants and fungi):
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY66-398]], TCA cycle III (animals):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[FERMENTATION-PWY]], mixed acid fermentation:
 
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** '''16''' reactions found over '''16''' reactions in the full pathway
 
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
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** '''8''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-6728]], methylaspartate cycle:
 
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** '''9''' reactions found over '''19''' reactions in the full pathway
 
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</div>
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12463 12463]
 
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* PIR:
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q04718 Q04718]
 
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** [http://www.uniprot.org/uniprot/Q58034 Q58034]
 
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** [http://www.uniprot.org/uniprot/O69294 O69294]
 
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** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3]
 
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** [http://www.uniprot.org/uniprot/P14407 P14407]
 
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** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0]
 
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** [http://www.uniprot.org/uniprot/Q58690 Q58690]
 
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** [http://www.uniprot.org/uniprot/O25883 O25883]
 
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** [http://www.uniprot.org/uniprot/O53446 O53446]
 
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** [http://www.uniprot.org/uniprot/O84863 O84863]
 
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** [http://www.uniprot.org/uniprot/Q51404 Q51404]
 
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** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3]
 
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** [http://www.uniprot.org/uniprot/P39461 P39461]
 
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** [http://www.uniprot.org/uniprot/Q55674 Q55674]
 
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** [http://www.uniprot.org/uniprot/P93033 P93033]
 
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** [http://www.uniprot.org/uniprot/Q43180 Q43180]
 
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** [http://www.uniprot.org/uniprot/O94552 O94552]
 
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** [http://www.uniprot.org/uniprot/O66271 O66271]
 
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** [http://www.uniprot.org/uniprot/Q60022 Q60022]
 
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** [http://www.uniprot.org/uniprot/P07343 P07343]
 
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** [http://www.uniprot.org/uniprot/P08417 P08417]
 
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** [http://www.uniprot.org/uniprot/P05042 P05042]
 
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** [http://www.uniprot.org/uniprot/P0AC33 P0AC33]
 
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** [http://www.uniprot.org/uniprot/P10173 P10173]
 
−
** [http://www.uniprot.org/uniprot/P14408 P14408]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082]
 
−
</div>
 
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{{#set: ec-number=ec-4.2.1.2}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=fumarate hydratase}}
 
−
{{#set: synonymous=malate dehydration|fumarate hydration}}
 
−
{{#set: nb gene associated=6}}
 
−
{{#set: nb pathway associated=16}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|bthetaiotaomicron|faecalibacterium|genome}}
 

Latest revision as of 11:19, 17 October 2022

Gene FSU_RS09895

  • transcription-direction:
    • positive
  • centisome-position:
    • 62.165928
  • left-end-position:
    • 2389039
  • right-end-position:
    • 2391159

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS09895&oldid=93593"