Difference between revisions of "FISUC RS03515"

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(Created page with "Category:reaction == Reaction 2.7.1.148-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.148 ec-2.7.1.148] * direction: ** left-to-right * common-name: ** 4-(cyti...")
(Created page with "Category:gene == Gene FISUC_RS03515 == * transcription-direction: ** positive * centisome-position: ** 21.626436 * left-end-position: ** 831025 * right-end-position: *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 2.7.1.148-RXN ==
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== Gene FISUC_RS03515 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.1.148 ec-2.7.1.148]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 21.626436   
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* common-name:
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* left-end-position:
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** 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase
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** 831025
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== Reaction formula ==
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* right-end-position:
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* 1 [[4-CYTIDINE-5-DIPHOSPHO-2-C]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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** 833787
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS14240]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[VALINE--TRNA-LIGASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[TRNA-CHARGING-PWY]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''21''' reactions found over '''21''' reactions in the full pathway
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=positive}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: centisome-position=21.626436    }}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=831025}}
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* Gene: [[FISUC_RS12270]]
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{{#set: right-end-position=833787}}
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** Category: [[annotation]]
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{{#set: organism associated=fsucgem}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction associated=1}}
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== Pathway(s) ==
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{{#set: nb pathway associated=1}}
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7560]], methylerythritol phosphate pathway II:
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18438 18438]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05634 R05634]
 
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{{#set: ec-number=ec-2.7.1.148}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS03515

  • transcription-direction:
    • positive
  • centisome-position:
    • 21.626436
  • left-end-position:
    • 831025
  • right-end-position:
    • 833787

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS03515&oldid=93682"