Difference between revisions of "FISUC RS15510"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction SHIKIMATE-KINASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71] * direction: ** left-to-right == Reaction formula...")
(Created page with "Category:gene == Gene FISUC_RS15510 == * common-name: ** purl * transcription-direction: ** negative * centisome-position: ** 98.93578 * left-end-position: ** 3801741...")
 
(14 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction SHIKIMATE-KINASE-RXN ==
+
== Gene FISUC_RS15510 ==
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71]
+
** purl
−
* direction:
+
* transcription-direction:
−
** left-to-right
+
** negative
−
== Reaction formula ==
+
* centisome-position:
−
* 1 [[ATP]][c] '''+''' 1 [[SHIKIMATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c]
+
** 98.93578   
−
== Gene(s) associated with this reaction ==
+
* left-end-position:
−
* Gene: [[FSU_RS13250]]
+
** 3801741
−
** Category: [[orthology]]
+
* right-end-position:
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** 3805616
−
* Gene: [[FSU_RS13245]]
+
== Organism(s) associated with this gene ==
−
** Category: [[orthology]]
+
* [[fsucgem]]
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
== Reaction(s) associated ==
−
== Pathway(s) ==
+
* [[FGAMSYN-RXN]]
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 +
* [[PWY-6277]]
 +
** '''7''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6121]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
== Reconstruction information  ==
+
* [[PWY-6122]]
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
{{#set: common-name=purl}}
−
== External links  ==
+
{{#set: transcription-direction=negative}}
−
* RHEA:
+
{{#set: centisome-position=98.93578    }}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13124 13124]
+
{{#set: left-end-position=3801741}}
−
* LIGAND-RXN:
+
{{#set: right-end-position=3805616}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
+
{{#set: organism associated=fsucgem}}
−
* UNIPROT:
+
{{#set: nb reaction associated=1}}
−
** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
 
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
 
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
 
−
** [http://www.uniprot.org/uniprot/P43880 P43880]
 
−
** [http://www.uniprot.org/uniprot/P63600 P63600]
 
−
** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
 
−
** [http://www.uniprot.org/uniprot/P37944 P37944]
 
−
** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
 
−
** [http://www.uniprot.org/uniprot/P10880 P10880]
 
−
** [http://www.uniprot.org/uniprot/Q00497 Q00497]
 
−
** [http://www.uniprot.org/uniprot/P34003 P34003]
 
−
** [http://www.uniprot.org/uniprot/P43906 P43906]
 
−
** [http://www.uniprot.org/uniprot/P72796 P72796]
 
−
{{#set: ec-number=ec-2.7.1.71}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=orthology}}
 
−
{{#set: reconstruction tool=orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=faecalibacterium|bifidobacterium}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS15510

  • common-name:
    • purl
  • transcription-direction:
    • negative
  • centisome-position:
    • 98.93578
  • left-end-position:
    • 3801741
  • right-end-position:
    • 3805616

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6277
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122
    • 5 reactions found over 5 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15510&oldid=93722"