Difference between revisions of "FISUC RS15510"

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(Created page with "Category:reaction == Reaction ACETOLACTSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6] * direction: ** left-to-right * common-name: ** acetolac...")
(Created page with "Category:gene == Gene FISUC_RS15510 == * common-name: ** purl * transcription-direction: ** negative * centisome-position: ** 98.93578 * left-end-position: ** 3801741...")
 
(13 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACETOLACTSYN-RXN ==
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== Gene FISUC_RS15510 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** acetolactate synthase large subunit
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** purl
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== Reaction formula ==
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* transcription-direction:
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* 1 [[PROTON]][c] '''+''' 2 [[PYRUVATE]][c] '''=>''' 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** negative
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== Gene(s) associated with this reaction ==
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* centisome-position:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 98.93578   
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* Gene: [[FSU_RS00425]]
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* left-end-position:
 +
** 3801741
 +
* right-end-position:
 +
** 3805616
 +
== Organism(s) associated with this gene ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[FGAMSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6277]]
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* Gene: [[FISUC_RS14235]]
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** '''7''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-6121]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* Gene: [[FISUC_RS13635]]
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* [[PWY-6122]]
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** Category: [[annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: common-name=purl}}
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* Gene: [[FISUC_RS13640]]
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{{#set: transcription-direction=negative}}
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** Category: [[annotation]]
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{{#set: centisome-position=98.93578    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=3801741}}
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* Gene: [[FSU_RS15615]]
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{{#set: right-end-position=3805616}}
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** Category: [[annotation]]
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{{#set: organism associated=fsucgem}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction associated=1}}
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** Category: [[orthology]]
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{{#set: nb pathway associated=3}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS15610]]
 
−
** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
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== Pathway(s) ==
 
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* [[PWY-5939]], pyruvate fermentation to (R)-acetoin II:
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-6389]], pyruvate fermentation to (S)-acetoin:
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-5938]], pyruvate fermentation to (R)-acetoin I:
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[VALSYN-PWY]], L-valine biosynthesis:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20504 20504]
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25249 25249]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00226 R00226]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q59950 Q59950]
 
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** [http://www.uniprot.org/uniprot/P42463 P42463]
 
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** [http://www.uniprot.org/uniprot/Q8XAV3 Q8XAV3]
 
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** [http://www.uniprot.org/uniprot/P27868 P27868]
 
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** [http://www.uniprot.org/uniprot/P45260 P45260]
 
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** [http://www.uniprot.org/uniprot/Q57625 Q57625]
 
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** [http://www.uniprot.org/uniprot/P37251 P37251]
 
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** [http://www.uniprot.org/uniprot/P45261 P45261]
 
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** [http://www.uniprot.org/uniprot/O27493 O27493]
 
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** [http://www.uniprot.org/uniprot/O66759 O66759]
 
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** [http://www.uniprot.org/uniprot/Q9PHU2 Q9PHU2]
 
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** [http://www.uniprot.org/uniprot/O05031 O05031]
 
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** [http://www.uniprot.org/uniprot/Q57725 Q57725]
 
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** [http://www.uniprot.org/uniprot/Q9PHU1 Q9PHU1]
 
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** [http://www.uniprot.org/uniprot/Q9JTI1 Q9JTI1]
 
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** [http://www.uniprot.org/uniprot/Q58077 Q58077]
 
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** [http://www.uniprot.org/uniprot/O28554 O28554]
 
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** [http://www.uniprot.org/uniprot/O53554 O53554]
 
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** [http://www.uniprot.org/uniprot/Q04789 Q04789]
 
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** [http://www.uniprot.org/uniprot/Q9JRF4 Q9JRF4]
 
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** [http://www.uniprot.org/uniprot/Q59272 Q59272]
 
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** [http://www.uniprot.org/uniprot/P27696 P27696]
 
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** [http://www.uniprot.org/uniprot/Q59498 Q59498]
 
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** [http://www.uniprot.org/uniprot/Q9RFQ7 Q9RFQ7]
 
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** [http://www.uniprot.org/uniprot/Q05767 Q05767]
 
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** [http://www.uniprot.org/uniprot/P40811 P40811]
 
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** [http://www.uniprot.org/uniprot/P21622 P21622]
 
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** [http://www.uniprot.org/uniprot/P27818 P27818]
 
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** [http://www.uniprot.org/uniprot/Q41768 Q41768]
 
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** [http://www.uniprot.org/uniprot/Q41769 Q41769]
 
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** [http://www.uniprot.org/uniprot/P69684 P69684]
 
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** [http://www.uniprot.org/uniprot/P27819 P27819]
 
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** [http://www.uniprot.org/uniprot/Q9R586 Q9R586]
 
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** [http://www.uniprot.org/uniprot/Q02137 Q02137]
 
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** [http://www.uniprot.org/uniprot/Q02140 Q02140]
 
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** [http://www.uniprot.org/uniprot/P36620 P36620]
 
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** [http://www.uniprot.org/uniprot/Q42767 Q42767]
 
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** [http://www.uniprot.org/uniprot/Q42768 Q42768]
 
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** [http://www.uniprot.org/uniprot/Q49865 Q49865]
 
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** [http://www.uniprot.org/uniprot/O22547 O22547]
 
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** [http://www.uniprot.org/uniprot/O49229 O49229]
 
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** [http://www.uniprot.org/uniprot/O22578 O22578]
 
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** [http://www.uniprot.org/uniprot/O49210 O49210]
 
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** [http://www.uniprot.org/uniprot/Q60021 Q60021]
 
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** [http://www.uniprot.org/uniprot/P07342 P07342]
 
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** [http://www.uniprot.org/uniprot/P00892 P00892]
 
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** [http://www.uniprot.org/uniprot/P08142 P08142]
 
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** [http://www.uniprot.org/uniprot/P0ADF8 P0ADF8]
 
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** [http://www.uniprot.org/uniprot/P00894 P00894]
 
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** [http://www.uniprot.org/uniprot/P00893 P00893]
 
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** [http://www.uniprot.org/uniprot/P17597 P17597]
 
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** [http://www.uniprot.org/uniprot/P09342 P09342]
 
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** [http://www.uniprot.org/uniprot/P09114 P09114]
 
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** [http://www.uniprot.org/uniprot/P14874 P14874]
 
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</div>
 
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{{#set: ec-number=ec-2.2.1.6}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=acetolactate synthase large subunit}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=plantarum|bifidobacterium|ecoli|genome|faecalibacterium|bthetaiotaomicron}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS15510

  • common-name:
    • purl
  • transcription-direction:
    • negative
  • centisome-position:
    • 98.93578
  • left-end-position:
    • 3801741
  • right-end-position:
    • 3805616

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6277
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122
    • 5 reactions found over 5 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15510&oldid=93722"