Difference between revisions of "FISUC RS02460"

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(Created page with "Category:reaction == Reaction 4.2.1.59-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [...")
(Created page with "Category:gene == Gene FISUC_RS02460 == * common-name: ** cysk * transcription-direction: ** negative * centisome-position: ** 14.823864 * left-end-position: ** 569627...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 4.2.1.59-RXN ==
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== Gene FISUC_RS02460 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
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** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** 3-hydroxyacyl-acp dehydratase fabz
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** cysk
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== Reaction formula ==
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* transcription-direction:
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* 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''=>''' 1 [[2-Octenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 14.823864   
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* Gene: [[FSU_RS01730]]
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* left-end-position:
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** Category: [[orthology]]
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** 569627
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* right-end-position:
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** 570547
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS01735]]
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* [[fsucgem]]
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** Category: [[orthology]]
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== Reaction(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[ACSERLY-RXN]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS14115]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS00310]]
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* [[RXN-12726]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[CYSTSYN-PWY]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6936]]
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* Gene: [[FSU_RS00290]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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** Category: [[orthology]]
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{{#set: common-name=cysk}}
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=negative}}
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</div>
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{{#set: centisome-position=14.823864    }}
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== Pathway(s) ==
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{{#set: left-end-position=569627}}
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
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{{#set: right-end-position=570547}}
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** '''20''' reactions found over '''31''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
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{{#set: nb reaction associated=2}}
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** '''22''' reactions found over '''31''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=3-hydroxyacyl-acp dehydratase fabz}}
 
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{{#set: nb gene associated=5}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS02460

  • common-name:
    • cysk
  • transcription-direction:
    • negative
  • centisome-position:
    • 14.823864
  • left-end-position:
    • 569627
  • right-end-position:
    • 570547

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • CYSTSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6936
    • 3 reactions found over 5 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS02460&oldid=93755"