Difference between revisions of "FSU RS13520"

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(Created page with "Category:reaction == Reaction FARNESYLTRANSTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29] * direction: ** left-to-right == Reaction...")
(Created page with "Category:gene == Gene FSU_RS13520 == * common-name: ** trub * transcription-direction: ** positive * centisome-position: ** 85.22893 * left-end-position: ** 3275351 *...")
 
(11 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction FARNESYLTRANSTRANSFERASE-RXN ==
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== Gene FSU_RS13520 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29]
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** trub
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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== Reaction formula ==
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* centisome-position:
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* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
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** 85.22893   
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== Gene(s) associated with this reaction ==
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* left-end-position:
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* Gene: [[FSU_RS10165]]
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** 3275351
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** Category: [[orthology]]
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* right-end-position:
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** 3276307
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* Gene: [[FSU_RS06175]]
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== Organism(s) associated with this gene ==
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** Category: [[orthology]]
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* [[fsucgem]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) associated ==
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== Pathway(s) ==
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* [[RXN-11839]]
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* [[PWY-7720]], ophiobolin F biosynthesis:
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** Category: [[annotation]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7736]], stellatic acid biosynthesis:
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{{#set: common-name=trub}}
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** '''4''' reactions found over '''8''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis:
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{{#set: centisome-position=85.22893    }}
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** '''1''' reactions found over '''1''' reactions in the full pathway
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{{#set: left-end-position=3275351}}
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* [[PWY-7492]], paspaline biosynthesis:
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{{#set: right-end-position=3276307}}
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** '''1''' reactions found over '''6''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[PWY-6691]], plaunotol biosynthesis:
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{{#set: nb reaction associated=1}}
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-7517]], brassicicene C biosynthesis:
 
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** '''1''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6659]], fusicoccin A biosynthesis:
 
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** '''1''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17654 17654]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P39464 P39464]
 
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** [http://www.uniprot.org/uniprot/P24322 P24322]
 
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** [http://www.uniprot.org/uniprot/P80042 P80042]
 
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** [http://www.uniprot.org/uniprot/Q12051 Q12051]
 
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** [http://www.uniprot.org/uniprot/P95999 P95999]
 
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** [http://www.uniprot.org/uniprot/P48368 P48368]
 
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** [http://www.uniprot.org/uniprot/P93227 P93227]
 
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** [http://www.uniprot.org/uniprot/P93228 P93228]
 
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** [http://www.uniprot.org/uniprot/Q42698 Q42698]
 
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** [http://www.uniprot.org/uniprot/Q43133 Q43133]
 
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** [http://www.uniprot.org/uniprot/Q42866 Q42866]
 
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** [http://www.uniprot.org/uniprot/P54976 P54976]
 
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{{#set: ec-number=ec-2.5.1.29}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=8}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron}}
 

Latest revision as of 11:19, 17 October 2022

Gene FSU_RS13520

  • common-name:
    • trub
  • transcription-direction:
    • positive
  • centisome-position:
    • 85.22893
  • left-end-position:
    • 3275351
  • right-end-position:
    • 3276307

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13520&oldid=93793"