Difference between revisions of "FSU RS13520"

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(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24] * direction: ** left-to-right * common-name: ** porp...")
(Created page with "Category:gene == Gene FSU_RS13520 == * common-name: ** trub * transcription-direction: ** positive * centisome-position: ** 85.22893 * left-end-position: ** 3275351 *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PORPHOBILSYNTH-RXN ==
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== Gene FSU_RS13520 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** porphobilinogen synthase
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** trub
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== Reaction formula ==
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* transcription-direction:
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* 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS01425]]
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** 85.22893   
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* left-end-position:
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** 3275351
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* right-end-position:
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** 3276307
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[RXN-11839]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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{{#set: common-name=trub}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=positive}}
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* Gene: [[FISUC_RS15235]]
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{{#set: centisome-position=85.22893    }}
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** Category: [[annotation]]
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{{#set: left-end-position=3275351}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: right-end-position=3276307}}
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== Pathway(s)  ==
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{{#set: organism associated=fsucgem}}
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
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{{#set: nb reaction associated=1}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine):
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P06214 P06214]
 
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** [http://www.uniprot.org/uniprot/P13716 P13716]
 
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** [http://www.uniprot.org/uniprot/Q7M315 Q7M315]
 
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** [http://www.uniprot.org/uniprot/P30124 P30124]
 
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** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37]
 
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** [http://www.uniprot.org/uniprot/P30950 P30950]
 
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** [http://www.uniprot.org/uniprot/Q60178 Q60178]
 
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** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5]
 
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** [http://www.uniprot.org/uniprot/Q59295 Q59295]
 
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** [http://www.uniprot.org/uniprot/Q02250 Q02250]
 
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** [http://www.uniprot.org/uniprot/P10518 P10518]
 
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** [http://www.uniprot.org/uniprot/Q43148 Q43148]
 
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** [http://www.uniprot.org/uniprot/Q42682 Q42682]
 
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** [http://www.uniprot.org/uniprot/Q43058 Q43058]
 
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** [http://www.uniprot.org/uniprot/Q59643 Q59643]
 
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** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1]
 
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** [http://www.uniprot.org/uniprot/P05373 P05373]
 
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** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2]
 
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** [http://www.uniprot.org/uniprot/Q42836 Q42836]
 
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** [http://www.uniprot.org/uniprot/P43210 P43210]
 
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** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9]
 
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</div>
 
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{{#set: ec-number=ec-4.2.1.24}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=porphobilinogen synthase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|ecoli}}
 

Latest revision as of 11:19, 17 October 2022

Gene FSU_RS13520

  • common-name:
    • trub
  • transcription-direction:
    • positive
  • centisome-position:
    • 85.22893
  • left-end-position:
    • 3275351
  • right-end-position:
    • 3276307

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13520&oldid=93793"