Difference between revisions of "FSU RS04640"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DIAMINOPIMEPIM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7] * direction: ** reversible * common-name: ** diaminopi...")
(Created page with "Category:gene == Gene FSU_RS04640 == * transcription-direction: ** positive * centisome-position: ** 28.203588 * left-end-position: ** 1083865 * right-end-position: **...")
 
(12 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction DIAMINOPIMEPIM-RXN ==
+
== Gene FSU_RS04640 ==
−
* ec-number:
+
* transcription-direction:
−
** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7]
+
** positive
−
* direction:
+
* centisome-position:
−
** reversible
+
** 28.203588   
−
* common-name:
+
* left-end-position:
−
** diaminopimelate epimerase
+
** 1083865
−
== Reaction formula ==
+
* right-end-position:
−
* 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
+
** 1084590
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[FSU_RS10985]]
+
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[RXN-11598]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
{{#set: transcription-direction=positive}}
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: centisome-position=28.203588    }}
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: left-end-position=1083865}}
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: right-end-position=1084590}}
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: organism associated=fsucgem}}
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: nb reaction associated=1}}
−
* Gene: [[FISUC_RS09045]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
== Pathway(s)  ==
 
−
* [[PWY-5097]], L-lysine biosynthesis VI:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2941]], L-lysine biosynthesis II:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15396 15396]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
 
−
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
 
−
** [http://www.uniprot.org/uniprot/P44859 P44859]
 
−
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
 
−
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
 
−
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
 
−
** [http://www.uniprot.org/uniprot/P46814 P46814]
 
−
** [http://www.uniprot.org/uniprot/O05322 O05322]
 
−
{{#set: ec-number=ec-5.1.1.7}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=diaminopimelate epimerase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}
 

Latest revision as of 11:20, 17 October 2022

Gene FSU_RS04640

  • transcription-direction:
    • positive
  • centisome-position:
    • 28.203588
  • left-end-position:
    • 1083865
  • right-end-position:
    • 1084590

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS04640&oldid=94109"