Difference between revisions of "FSU RS01990"

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(Created page with "Category:reaction == Reaction 1.1.1.39-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38] * direction: ** left-to-right == Reaction formula == * 1 [...")
(Created page with "Category:gene == Gene FSU_RS01990 == * common-name: ** rpia * transcription-direction: ** positive * centisome-position: ** 12.318098 * left-end-position: ** 473385 *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 1.1.1.39-RXN ==
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== Gene FSU_RS01990 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
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** rpia
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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== Reaction formula ==
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* centisome-position:
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* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
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** 12.318098   
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== Gene(s) associated with this reaction  ==
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* left-end-position:
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* Gene: [[FSU_RS05855]]
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** 473385
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** Category: [[orthology]]
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* right-end-position:
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** 474074
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== Pathway(s) ==
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== Organism(s) associated with this gene  ==
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* [[PWY-7686]], L-malate degradation II:
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* [[fsucgem]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reaction(s) associated ==
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
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* [[RIB5PISOM-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* [[NONOXIPENT-PWY]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[P124-PWY]]
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** '''13''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-5723]]
 
** '''8''' reactions found over '''10''' reactions in the full pathway
 
** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-3641]], L-carnitine degradation III:
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* [[PWY-1861]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
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* [[P185-PWY]]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol:
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* [[CALVIN-PWY]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** '''11''' reactions found over '''13''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I:
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{{#set: common-name=rpia}}
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** '''10''' reactions found over '''13''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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== Reconstruction information  ==
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{{#set: centisome-position=12.318098    }}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: left-end-position=473385}}
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== External links  ==
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{{#set: right-end-position=474074}}
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* RHEA:
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{{#set: organism associated=fsucgem}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
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{{#set: nb reaction associated=1}}
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 
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** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
 
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** [http://www.uniprot.org/uniprot/O59029 O59029]
 
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** [http://www.uniprot.org/uniprot/P16468 P16468]
 
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** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
 
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** [http://www.uniprot.org/uniprot/P26616 P26616]
 
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** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
 
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** [http://www.uniprot.org/uniprot/P37224 P37224]
 
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** [http://www.uniprot.org/uniprot/P37225 P37225]
 
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** [http://www.uniprot.org/uniprot/P37221 P37221]
 
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** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
 
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** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
 
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{{#set: ec-number=ec-1.1.1.38}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=6}}
 
{{#set: nb pathway associated=6}}
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum}}
 

Latest revision as of 11:20, 17 October 2022

Gene FSU_RS01990

  • common-name:
    • rpia
  • transcription-direction:
    • positive
  • centisome-position:
    • 12.318098
  • left-end-position:
    • 473385
  • right-end-position:
    • 474074

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • P124-PWY
    • 13 reactions found over 15 reactions in the full pathway
  • PWY-5723
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-1861
    • 9 reactions found over 9 reactions in the full pathway
  • P185-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • CALVIN-PWY
    • 11 reactions found over 13 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS01990&oldid=94146"