Difference between revisions of "FSU RS00290"

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(Created page with "Category:reaction == Reaction PGLYCDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95] * direction: ** reversible * common-name: ** phosphog...")
(Created page with "Category:gene == Gene FSU_RS00290 == * common-name: ** fabd * transcription-direction: ** negative * centisome-position: ** 1.696017 * left-end-position: ** 65178 * ri...")
 
(13 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PGLYCDEHYDROG-RXN ==
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== Gene FSU_RS00290 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.1.1.95 ec-1.1.1.95]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** phosphoglycerate dehydrogenase
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** fabd
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== Reaction formula ==
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* transcription-direction:
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* 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS14010]]
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** 1.696017   
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* left-end-position:
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** 65178
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* right-end-position:
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** 66026
 +
== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.3.1.180-RXN]]
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** Category: [[orthology]]
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[4.2.1.59-RXN]]
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** Category: [[orthology]]
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[ACP-S-ACETYLTRANSFER-RXN]]
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** Category: [[orthology]]
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FISUC_RS12040]]
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-20481]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-20482]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-20490]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-20498]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15335]]
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* [[RXN-9537]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s) ==
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</div>
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* [[PWY-8010]], L-cysteine biosynthesis IX (Trichomonas vaginalis):
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== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-4381]]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[SERSYN-PWY]], L-serine biosynthesis I:
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* [[PWY-5994]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** '''20''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-5971]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''22''' reactions found over '''31''' reactions in the full pathway
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[FASYN-INITIAL-PWY]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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** '''5''' reactions found over '''2''' reactions in the full pathway
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5966]]
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== External links  ==
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* RHEA:
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* [[PWY-6799]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12644 12644]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-8012]]
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** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
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** '''2''' reactions found over '''26''' reactions in the full pathway
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* UNIPROT:
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* [[PWY-7388]]
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** [http://www.uniprot.org/uniprot/Q58424 Q58424]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P43885 P43885]
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* [[PWY-8047]]
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** [http://www.uniprot.org/uniprot/P35136 P35136]
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** '''2''' reactions found over '''19''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
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* [[PWY-8049]]
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** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P40510 P40510]
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</div>
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** [http://www.uniprot.org/uniprot/P40054 P40054]
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{{#set: common-name=fabd}}
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** [http://www.uniprot.org/uniprot/O49485 O49485]
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{{#set: transcription-direction=negative}}
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** [http://www.uniprot.org/uniprot/P87228 P87228]
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{{#set: centisome-position=1.696017    }}
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** [http://www.uniprot.org/uniprot/O04130 O04130]
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{{#set: left-end-position=65178}}
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{{#set: ec-number=ec-1.1.1.95}}
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{{#set: right-end-position=66026}}
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{{#set: direction=reversible}}
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{{#set: organism associated=fsucgem}}
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{{#set: common-name=phosphoglycerate dehydrogenase}}
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{{#set: nb reaction associated=9}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=10}}
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|plantarum|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS00290

  • common-name:
    • fabd
  • transcription-direction:
    • negative
  • centisome-position:
    • 1.696017
  • left-end-position:
    • 65178
  • right-end-position:
    • 66026

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-4381
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6799
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-8012
    • 2 reactions found over 26 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-8047
    • 2 reactions found over 19 reactions in the full pathway
  • PWY-8049
    • 2 reactions found over 14 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS00290&oldid=94401"