Difference between revisions of "FSU RS00290"

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(Created page with "Category:reaction == Reaction ACYLCOASYN-RXN == * common-name: ** 2,3,4-saturated fatty acyl-coa synthetase ** long-chain fatty acid--coa ligase * ec-number: ** [http://en...")
(Created page with "Category:gene == Gene FSU_RS00290 == * common-name: ** fabd * transcription-direction: ** negative * centisome-position: ** 1.696017 * left-end-position: ** 65178 * ri...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACYLCOASYN-RXN ==
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== Gene FSU_RS00290 ==
 
* common-name:
 
* common-name:
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** 2,3,4-saturated fatty acyl-coa synthetase
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** fabd
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** long-chain fatty acid--coa ligase
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* transcription-direction:
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* ec-number:
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** negative
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** [http://enzyme.expasy.org/EC/6.2.1 ec-6.2.1]
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* centisome-position:
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* direction:
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** 1.696017   
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** left-to-right
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* left-end-position:
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* synonymous:
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** 65178
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** fatty acid thiokinase (long-chain)
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* right-end-position:
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** acyl-activating enzyme
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** 66026
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
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* [[fsucgem]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[FISUC_RS12045]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2.3.1.180-RXN]]
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** Category: [[orthology]]
 +
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* [[4.2.1.59-RXN]]
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** Category: [[orthology]]
 +
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* [[ACP-S-ACETYLTRANSFER-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS14015]]
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** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-20481]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[RXN-20482]]
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* [[FAO-PWY]], fatty acid &beta;-oxidation I:
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** Category: [[annotation]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-5136]], fatty acid &beta;-oxidation II (peroxisome):
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* [[RXN-20490]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY66-391]], fatty acid &beta;-oxidation VI (peroxisome):
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-20498]]
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* [[PWY-7288]], fatty acid &beta;-oxidation (peroxisome, yeast):
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** Category: [[annotation]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-9537]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
−
== External links  ==
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* UNIPROT:
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* [[PWY-4381]]
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** [http://www.uniprot.org/uniprot/P18163 P18163]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P39518 P39518]
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* [[PWY-5994]]
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** [http://www.uniprot.org/uniprot/O51162 O51162]
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** '''20''' reactions found over '''31''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P39002 P39002]
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* [[PWY-5971]]
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
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** '''22''' reactions found over '''31''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
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* [[FASYN-INITIAL-PWY]]
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** [http://www.uniprot.org/uniprot/O83181 O83181]
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** '''5''' reactions found over '''2''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
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* [[PWY-5966]]
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** [http://www.uniprot.org/uniprot/P94547 P94547]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
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* [[PWY-6799]]
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** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
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* [[PWY-8012]]
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** [http://www.uniprot.org/uniprot/P44446 P44446]
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** '''2''' reactions found over '''26''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O30039 O30039]
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* [[PWY-7388]]
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** [http://www.uniprot.org/uniprot/O51539 O51539]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
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* [[PWY-8047]]
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** [http://www.uniprot.org/uniprot/P33121 P33121]
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** '''2''' reactions found over '''19''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P33124 P33124]
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* [[PWY-8049]]
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** [http://www.uniprot.org/uniprot/P30624 P30624]
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** '''2''' reactions found over '''14''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 
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** [http://www.uniprot.org/uniprot/P69451 P69451]
 
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** [http://www.uniprot.org/uniprot/P69452 P69452]
 
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** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 
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** [http://www.uniprot.org/uniprot/P47912 P47912]
 
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** [http://www.uniprot.org/uniprot/P73004 P73004]
 
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** [http://www.uniprot.org/uniprot/O81614 O81614]
 
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** [http://www.uniprot.org/uniprot/O15840 O15840]
 
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** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 
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** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 
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** [http://www.uniprot.org/uniprot/O60135 O60135]
 
 
</div>
 
</div>
−
{{#set: common-name=2,3,4-saturated fatty acyl-coa synthetase|long-chain fatty acid--coa ligase}}
+
{{#set: common-name=fabd}}
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{{#set: ec-number=ec-6.2.1}}
+
{{#set: transcription-direction=negative}}
−
{{#set: direction=left-to-right}}
+
{{#set: centisome-position=1.696017    }}
−
{{#set: synonymous=acyl-activating enzyme|fatty acid thiokinase (long-chain)}}
+
{{#set: left-end-position=65178}}
−
{{#set: nb gene associated=2}}
+
{{#set: right-end-position=66026}}
−
{{#set: nb pathway associated=4}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb reaction associated=9}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=10}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS00290

  • common-name:
    • fabd
  • transcription-direction:
    • negative
  • centisome-position:
    • 1.696017
  • left-end-position:
    • 65178
  • right-end-position:
    • 66026

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-4381
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6799
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-8012
    • 2 reactions found over 26 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-8047
    • 2 reactions found over 19 reactions in the full pathway
  • PWY-8049
    • 2 reactions found over 14 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS00290&oldid=94401"