Difference between revisions of "FSU RS12065"

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(Created page with "Category:reaction == Reaction 2.3.1.41-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] *...")
(Created page with "Category:gene == Gene FSU_RS12065 == * common-name: ** fabg * transcription-direction: ** positive * centisome-position: ** 76.40322 * left-end-position: ** 2936179 *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 2.3.1.41-RXN ==
+
== Gene FSU_RS12065 ==
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* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] reductase
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** fabg
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** beta-ketoacyl-acp synthase ii
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* transcription-direction:
−
== Reaction formula ==
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** positive
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* 1 [[ACYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* centisome-position:
−
== Gene(s) associated with this reaction  ==
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** 76.40322   
−
* Gene: [[FISUC_RS15210]]
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* left-end-position:
 +
** 2936179
 +
* right-end-position:
 +
** 2936907
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2.3.1.41-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS15410]]
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FISUC_RS10110]]
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* [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS12065]]
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* [[RXN-10060]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS01400]]
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* [[RXN-10655]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS01605]]
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* [[RXN-10659]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
== Pathway(s)  ==
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* [[RXN-11476]]
−
== Reconstruction information  ==
+
** Category: [[annotation]]
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
== External links  ==
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* [[RXN-11480]]
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* LIGAND-RXN:
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** Category: [[annotation]]
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** [http://www.genome.jp/dbget-bin/www_bget?R02768 R02768]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: ec-number=ec-2.3.1.179|ec-2.3.1.41}}
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* [[RXN-12994]]
−
{{#set: direction=left-to-right}}
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** Category: [[annotation]]
−
{{#set: common-name=beta-ketoacyl-acp synthase ii|3-oxoacyl-[acyl-carrier-protein] reductase}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: nb gene associated=6}}
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* [[RXN-13008]]
−
{{#set: nb pathway associated=0}}
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** Category: [[annotation]]
−
{{#set: reconstruction category=annotation}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: reconstruction tool=pathwaytools}}
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* [[RXN-13443]]
−
{{#set: reconstruction comment=n.a}}
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** Category: [[annotation]]
−
{{#set: reconstruction source=genome}}
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16616]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-9540]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9552]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9556]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9633]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-349]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-469]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FASYN-ELONG-PWY]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5499]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6113]]
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
 +
** '''12''' reactions found over '''182''' reactions in the full pathway
 +
* [[PWY-6282]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7724]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7619]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7602]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7727]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7053]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7606]]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7663]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5994]]
 +
** '''20''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5971]]
 +
** '''22''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7388]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5367]]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5973]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5989]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 +
{{#set: common-name=fabg}}
 +
{{#set: transcription-direction=positive}}
 +
{{#set: centisome-position=76.40322    }}
 +
{{#set: left-end-position=2936179}}
 +
{{#set: right-end-position=2936907}}
 +
{{#set: organism associated=fsucgem}}
 +
{{#set: nb reaction associated=30}}
 +
{{#set: nb pathway associated=23}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS12065

  • common-name:
    • fabg
  • transcription-direction:
    • positive
  • centisome-position:
    • 76.40322
  • left-end-position:
    • 2936179
  • right-end-position:
    • 2936907

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5499
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7724
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7619
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7602
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7727
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7053
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7606
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS12065&oldid=94458"