Difference between revisions of "FSU RS12065"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ALANINE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7] * direction: ** left-to-right * common-name: **...")
(Created page with "Category:gene == Gene FSU_RS12065 == * common-name: ** fabg * transcription-direction: ** positive * centisome-position: ** 76.40322 * left-end-position: ** 2936179 *...")
 
(8 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction ALANINE--TRNA-LIGASE-RXN ==
+
== Gene FSU_RS12065 ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
−
** alanine--trna ligase
+
** fabg
−
== Reaction formula ==
+
* transcription-direction:
−
* 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** positive
−
== Gene(s) associated with this reaction  ==
+
* centisome-position:
−
* Gene: [[FISUC_RS05190]]
+
** 76.40322   
 +
* left-end-position:
 +
** 2936179
 +
* right-end-position:
 +
** 2936907
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2.3.1.41-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-REDUCT-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10060]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10655]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10659]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11476]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11480]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12994]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13443]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16616]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* [[RXN-9540]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS07080]]
+
* [[RXN-9552]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
== Pathway(s)  ==
+
* [[RXN-9556]]
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
** Category: [[annotation]]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
== Reconstruction information  ==
+
* [[RXN-9633]]
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
** Category: [[annotation]]
−
== External links  ==
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-349]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-469]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* [[FASYN-ELONG-PWY]]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12541 12541]
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* LIGAND-RXN:
+
* [[PWY-5499]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* UNIPROT:
+
* [[PWY-6113]]
−
** [http://www.uniprot.org/uniprot/P56452 P56452]
+
** '''7''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O27718 O27718]
+
* [[PWYG-321]]
−
** [http://www.uniprot.org/uniprot/O34526 O34526]
+
** '''12''' reactions found over '''182''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P47534 P47534]
+
* [[PWY-6282]]
−
** [http://www.uniprot.org/uniprot/O58035 O58035]
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
+
* [[PWY-6519]]
−
** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
+
** '''11''' reactions found over '''11''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q57984 Q57984]
+
* [[PWY-7724]]
−
** [http://www.uniprot.org/uniprot/O51238 O51238]
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
+
* [[PWY-7619]]
−
** [http://www.uniprot.org/uniprot/O83980 O83980]
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
+
* [[PWY-7602]]
−
** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O67323 O67323]
+
* [[PWY-7727]]
−
** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
+
* [[PWY-7053]]
−
** [http://www.uniprot.org/uniprot/P49588 P49588]
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P43815 P43815]
+
* [[PWY-7606]]
−
** [http://www.uniprot.org/uniprot/P50475 P50475]
+
** '''1''' reactions found over '''14''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P24075 P24075]
+
* [[PWY-7664]]
−
** [http://www.uniprot.org/uniprot/P27866 P27866]
+
** '''10''' reactions found over '''14''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P35029 P35029]
+
* [[PWY-7663]]
−
** [http://www.uniprot.org/uniprot/P40825 P40825]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P75368 P75368]
+
* [[PWY-5994]]
−
** [http://www.uniprot.org/uniprot/Q48976 Q48976]
+
** '''20''' reactions found over '''31''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P00957 P00957]
+
* [[PWY-5971]]
−
** [http://www.uniprot.org/uniprot/P21894 P21894]
+
** '''22''' reactions found over '''31''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O50189 O50189]
+
* [[PWY-7388]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5367]]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5973]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5989]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: ec-number=ec-6.1.1.7}}
+
{{#set: common-name=fabg}}
−
{{#set: direction=left-to-right}}
+
{{#set: transcription-direction=positive}}
−
{{#set: common-name=alanine--trna ligase}}
+
{{#set: centisome-position=76.40322    }}
−
{{#set: nb gene associated=2}}
+
{{#set: left-end-position=2936179}}
−
{{#set: nb pathway associated=1}}
+
{{#set: right-end-position=2936907}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb reaction associated=30}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb pathway associated=23}}
−
{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS12065

  • common-name:
    • fabg
  • transcription-direction:
    • positive
  • centisome-position:
    • 76.40322
  • left-end-position:
    • 2936179
  • right-end-position:
    • 2936907

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5499
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7724
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7619
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7602
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7727
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7053
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7606
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS12065&oldid=94458"