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| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction GLYRIBONUCSYN-RXN == | + | == Gene FSU_RS03125 == |
| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13]
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| − | * direction:
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| − | ** left-to-right
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| | * common-name: | | * common-name: |
| − | ** phosphoribosylamine--glycine ligase | + | ** hola |
| − | == Reaction formula ==
| + | * transcription-direction: |
| − | * 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] | + | ** positive |
| − | == Gene(s) associated with this reaction == | + | * centisome-position: |
| − | * Gene: [[FSU_RS11270]] | + | ** 18.895792 |
| | + | * left-end-position: |
| | + | ** 726166 |
| | + | * right-end-position: |
| | + | ** 727134 |
| | + | == Organism(s) associated with this gene == |
| | + | * [[fsucgem]] |
| | + | == Reaction(s) associated == |
| | + | * [[DNA-DIRECTED-DNA-POLYMERASE-RXN]] |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
| − | ** Category: [[orthology]]
| + | {{#set: common-name=hola}} |
| − | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: transcription-direction=positive}} |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: centisome-position=18.895792 }} |
| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: left-end-position=726166}} |
| − | * Gene: [[FISUC_RS09330]]
| + | {{#set: right-end-position=727134}} |
| − | ** Category: [[annotation]]
| + | {{#set: organism associated=fsucgem}} |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: nb reaction associated=1}} |
| − | == Pathway(s) ==
| |
| − | * [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
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| − | ** '''7''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | == Reconstruction information ==
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| − | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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| − | == External links ==
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| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P07244 P07244]
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| − | ** [http://www.uniprot.org/uniprot/Q58347 Q58347]
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| − | ** [http://www.uniprot.org/uniprot/P12039 P12039]
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| − | ** [http://www.uniprot.org/uniprot/P21872 P21872]
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| − | ** [http://www.uniprot.org/uniprot/P15640 P15640]
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| − | ** [http://www.uniprot.org/uniprot/P00967 P00967]
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| − | ** [http://www.uniprot.org/uniprot/P16340 P16340]
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| − | ** [http://www.uniprot.org/uniprot/P22102 P22102]
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| − | ** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
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| − | ** [http://www.uniprot.org/uniprot/P43845 P43845]
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| − | ** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
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| − | ** [http://www.uniprot.org/uniprot/Q64737 Q64737]
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| − | ** [http://www.uniprot.org/uniprot/P20772 P20772]
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| − | ** [http://www.uniprot.org/uniprot/P26977 P26977]
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| − | ** [http://www.uniprot.org/uniprot/Q59492 Q59492]
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| − | ** [http://www.uniprot.org/uniprot/P74232 P74232]
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| − | ** [http://www.uniprot.org/uniprot/Q42804 Q42804]
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| − | ** [http://www.uniprot.org/uniprot/P52421 P52421]
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| − | </div>
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| − | {{#set: ec-number=ec-6.3.4.13}} | |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=phosphoribosylamine--glycine ligase}} | |
| − | {{#set: nb gene associated=2}} | |
| − | {{#set: nb pathway associated=3}} | |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=orthofinder|pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=bifidobacterium|ecoli|plantarum|genome}}
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