Difference between revisions of "FSU RS03125"

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(Created page with "Category:reaction == Reaction 2.5.1.19-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19] * direction: ** reversible * common-name: ** 3-phosphoshik...")
(Created page with "Category:gene == Gene FSU_RS03125 == * common-name: ** hola * transcription-direction: ** positive * centisome-position: ** 18.895792 * left-end-position: ** 726166 *...")
 
(12 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 2.5.1.19-RXN ==
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== Gene FSU_RS03125 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** 3-phosphoshikimate 1-carboxyvinyltransferase
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** hola
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== Reaction formula ==
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* transcription-direction:
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* 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[SHIKIMATE-5P]][c] '''<=>''' 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''+''' 1 [[Pi]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS14855]]
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** 18.895792   
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* left-end-position:
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** 726166
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* right-end-position:
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** 727134
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS08110]]
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{{#set: common-name=hola}}
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** Category: [[annotation]]
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{{#set: transcription-direction=positive}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: centisome-position=18.895792    }}
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* Gene: [[FISUC_RS12880]]
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{{#set: left-end-position=726166}}
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** Category: [[annotation]]
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{{#set: right-end-position=727134}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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{{#set: organism associated=fsucgem}}
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* Gene: [[FSU_RS10040]]
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{{#set: nb reaction associated=1}}
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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== Pathway(s)  ==
 
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21259 21259]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03460 R03460]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P22299 P22299]
 
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** [http://www.uniprot.org/uniprot/P07547 P07547]
 
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** [http://www.uniprot.org/uniprot/P08566 P08566]
 
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** [http://www.uniprot.org/uniprot/P22487 P22487]
 
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** [http://www.uniprot.org/uniprot/P52312 P52312]
 
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** [http://www.uniprot.org/uniprot/Q9JTT3 Q9JTT3]
 
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** [http://www.uniprot.org/uniprot/Q03421 Q03421]
 
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** [http://www.uniprot.org/uniprot/P19786 P19786]
 
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** [http://www.uniprot.org/uniprot/P17688 P17688]
 
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** [http://www.uniprot.org/uniprot/P24497 P24497]
 
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** [http://www.uniprot.org/uniprot/P23981 P23981]
 
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** [http://www.uniprot.org/uniprot/P23281 P23281]
 
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** [http://www.uniprot.org/uniprot/Q04570 Q04570]
 
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** [http://www.uniprot.org/uniprot/P43905 P43905]
 
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** [http://www.uniprot.org/uniprot/Q59975 Q59975]
 
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** [http://www.uniprot.org/uniprot/P12421 P12421]
 
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** [http://www.uniprot.org/uniprot/P07637 P07637]
 
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** [http://www.uniprot.org/uniprot/P19688 P19688]
 
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** [http://www.uniprot.org/uniprot/P0A6D3 P0A6D3]
 
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** [http://www.uniprot.org/uniprot/P11043 P11043]
 
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</div>
 
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{{#set: ec-number=ec-2.5.1.19}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=3-phosphoshikimate 1-carboxyvinyltransferase}}
 
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{{#set: nb gene associated=4}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS03125

  • common-name:
    • hola
  • transcription-direction:
    • positive
  • centisome-position:
    • 18.895792
  • left-end-position:
    • 726166
  • right-end-position:
    • 727134

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS03125&oldid=94487"