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| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == | + | == Gene FSU_RS03125 == |
| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
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| − | * direction:
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| − | ** left-to-right
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| | * common-name: | | * common-name: |
| − | ** shikimate dehydrogenase | + | ** hola |
| − | == Reaction formula == | + | * transcription-direction: |
| − | * 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c] | + | ** positive |
| − | == Gene(s) associated with this reaction == | + | * centisome-position: |
| − | * Gene: [[FISUC_RS11285]] | + | ** 18.895792 |
| | + | * left-end-position: |
| | + | ** 726166 |
| | + | * right-end-position: |
| | + | ** 727134 |
| | + | == Organism(s) associated with this gene == |
| | + | * [[fsucgem]] |
| | + | == Reaction(s) associated == |
| | + | * [[DNA-DIRECTED-DNA-POLYMERASE-RXN]] |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
| − | * Gene: [[FSU_RS13250]]
| + | {{#set: common-name=hola}} |
| − | ** Category: [[annotation]]
| + | {{#set: transcription-direction=positive}} |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: centisome-position=18.895792 }} |
| − | ** Category: [[orthology]]
| + | {{#set: left-end-position=726166}} |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: right-end-position=727134}} |
| − | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: organism associated=fsucgem}} |
| − | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: nb reaction associated=1}} |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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| − | == Pathway(s) ==
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| − | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | == Reconstruction information ==
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| − | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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| − | == External links ==
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| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P07547 P07547]
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| − | ** [http://www.uniprot.org/uniprot/P08566 P08566]
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| − | ** [http://www.uniprot.org/uniprot/Q58484 Q58484]
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| − | ** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
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| − | ** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
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| − | ** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
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| − | ** [http://www.uniprot.org/uniprot/Q44606 Q44606]
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| − | ** [http://www.uniprot.org/uniprot/Q44608 Q44608]
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| − | ** [http://www.uniprot.org/uniprot/Q44609 Q44609]
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| − | ** [http://www.uniprot.org/uniprot/Q44610 Q44610]
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| − | ** [http://www.uniprot.org/uniprot/Q44611 Q44611]
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| − | ** [http://www.uniprot.org/uniprot/Q44612 Q44612]
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| − | ** [http://www.uniprot.org/uniprot/P15770 P15770]
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| − | ** [http://www.uniprot.org/uniprot/Q42947 Q42947]
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| − | ** [http://www.uniprot.org/uniprot/O65917 O65917]
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| − | </div>
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| − | {{#set: ec-number=ec-1.1.1.25}} | |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=shikimate dehydrogenase}} | |
| − | {{#set: nb gene associated=2}} | |
| − | {{#set: nb pathway associated=1}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|orthofinder}} | |
| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
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