Difference between revisions of "FSU RS01770"

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(Created page with "Category:reaction == Reaction GLYOHMETRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1] * direction: ** reversible * common-name: ** serine hydr...")
(Created page with "Category:gene == Gene FSU_RS01770 == * common-name: ** glgb * transcription-direction: ** positive * centisome-position: ** 10.936132 * left-end-position: ** 420276 *...")
 
(9 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GLYOHMETRANS-RXN ==
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== Gene FSU_RS01770 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** serine hydroxymethyltransferase
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** glgb
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== Reaction formula ==
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* transcription-direction:
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* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FISUC_RS12485]]
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** 10.936132   
 +
* left-end-position:
 +
** 420276
 +
* right-end-position:
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** 422492
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[GLCS1]]
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** Category: [[manual]]
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*** source: [[add_reactions_other_databases]]; tool: [[unknown-tool]]; comment: glycogen phosphorylase, orthologous to several species
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* [[GLYCOGEN-BRANCH-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14371]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14372]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-18777]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7669]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS14455]]
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* [[RXN-7710]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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</div>
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Pathway(s) associated ==
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* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
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* [[GLYCOGENSYNTH-PWY]]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-2161]], folate polyglutamylation:
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* [[PWY-622]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** '''6''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-2201]], folate transformations I:
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* [[PWY-7900]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-3841]], folate transformations II:
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* [[PWY-5067]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-181]], photorespiration:
 
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** '''4''' reactions found over '''9''' reactions in the full pathway
 
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* [[GLYSYN-PWY]], glycine biosynthesis I:
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
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** '''9''' reactions found over '''24''' reactions in the full pathway
 
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis:
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-3661]], glycine betaine degradation I:
 
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** '''3''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
** '''1''' reactions found over '''4''' reactions in the full pathway
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</div>
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{{#set: common-name=glgb}}
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== Reconstruction information  ==
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{{#set: transcription-direction=positive}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: centisome-position=10.936132    }}
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== External links  ==
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{{#set: left-end-position=420276}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: right-end-position=422492}}
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* RHEA:
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{{#set: organism associated=fsucgem}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
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{{#set: nb reaction associated=7}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P35623 P35623]
 
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** [http://www.uniprot.org/uniprot/P34898 P34898]
 
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** [http://www.uniprot.org/uniprot/P34899 P34899]
 
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** [http://www.uniprot.org/uniprot/P34896 P34896]
 
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** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
 
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** [http://www.uniprot.org/uniprot/P34897 P34897]
 
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** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
 
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** [http://www.uniprot.org/uniprot/O23254 O23254]
 
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** [http://www.uniprot.org/uniprot/O53441 O53441]
 
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** [http://www.uniprot.org/uniprot/O08370 O08370]
 
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** [http://www.uniprot.org/uniprot/P43844 P43844]
 
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** [http://www.uniprot.org/uniprot/Q58992 Q58992]
 
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** [http://www.uniprot.org/uniprot/O66776 O66776]
 
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** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
 
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** [http://www.uniprot.org/uniprot/P47634 P47634]
 
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** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
 
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** [http://www.uniprot.org/uniprot/P56089 P56089]
 
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** [http://www.uniprot.org/uniprot/O53615 O53615]
 
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** [http://www.uniprot.org/uniprot/O83349 O83349]
 
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** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
 
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** [http://www.uniprot.org/uniprot/O51547 O51547]
 
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** [http://www.uniprot.org/uniprot/O84439 O84439]
 
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** [http://www.uniprot.org/uniprot/P24531 P24531]
 
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** [http://www.uniprot.org/uniprot/P39148 P39148]
 
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** [http://www.uniprot.org/uniprot/P24060 P24060]
 
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** [http://www.uniprot.org/uniprot/P37292 P37292]
 
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** [http://www.uniprot.org/uniprot/P34895 P34895]
 
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** [http://www.uniprot.org/uniprot/P34894 P34894]
 
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** [http://www.uniprot.org/uniprot/P49357 P49357]
 
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** [http://www.uniprot.org/uniprot/P49358 P49358]
 
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** [http://www.uniprot.org/uniprot/P50433 P50433]
 
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** [http://www.uniprot.org/uniprot/P37291 P37291]
 
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** [http://www.uniprot.org/uniprot/P78011 P78011]
 
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** [http://www.uniprot.org/uniprot/P77962 P77962]
 
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** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
 
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** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
 
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** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
 
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** [http://www.uniprot.org/uniprot/O23984 O23984]
 
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** [http://www.uniprot.org/uniprot/P0A825 P0A825]
 
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** [http://www.uniprot.org/uniprot/P07511 P07511]
 
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</div>
 
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{{#set: ec-number=ec-2.1.2.1}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=serine hydroxymethyltransferase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=10}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS01770

  • common-name:
    • glgb
  • transcription-direction:
    • positive
  • centisome-position:
    • 10.936132
  • left-end-position:
    • 420276
  • right-end-position:
    • 422492

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLYCOGENSYNTH-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-622
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7900
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-5067
    • 1 reactions found over 4 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS01770&oldid=94494"