Difference between revisions of "FSU RS01770"

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(Created page with "Category:reaction == Reaction RXN-9556 == * common-name: ** 3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase ** 3-oxoacyl-acp reductase fabg ** 3-oxoacyl-[acyl-carrier...")
(Created page with "Category:gene == Gene FSU_RS01770 == * common-name: ** glgb * transcription-direction: ** positive * centisome-position: ** 10.936132 * left-end-position: ** 420276 *...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-9556 ==
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== Gene FSU_RS01770 ==
 
* common-name:
 
* common-name:
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** 3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase
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** glgb
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** 3-oxoacyl-acp reductase fabg
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* transcription-direction:
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** 3-oxoacyl-[acyl-carrier-protein] reductase
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** positive
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* ec-number:
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* centisome-position:
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** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
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** 10.936132   
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* direction:
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* left-end-position:
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** left-to-right
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** 420276
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== Reaction formula ==
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* right-end-position:
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* 1 [[3-oxo-cis-vaccenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxy-cis-vaccenoyl-ACPs]][c]
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** 422492
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS10110]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[GLCS1]]
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** Category: [[manual]]
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*** source: [[add_reactions_other_databases]]; tool: [[unknown-tool]]; comment: glycogen phosphorylase, orthologous to several species
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* [[GLYCOGEN-BRANCH-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS15070]]
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* [[RXN-14371]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS01260]]
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* [[RXN-14372]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS12065]]
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* [[RXN-18777]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-7669]]
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* [[PWY-5973]], cis-vaccenate biosynthesis:
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** Category: [[annotation]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-7710]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=3-oxoacyl-acp reductase fabg|3-oxoacyl-[acyl-carrier-protein] reductase|3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase}}
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</div>
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{{#set: ec-number=ec-1.1.1.100}}
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== Pathway(s) associated ==
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{{#set: direction=left-to-right}}
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* [[GLYCOGENSYNTH-PWY]]
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{{#set: nb gene associated=4}}
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** '''4''' reactions found over '''4''' reactions in the full pathway
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{{#set: nb pathway associated=1}}
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* [[PWY-622]]
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{{#set: reconstruction category=annotation}}
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** '''6''' reactions found over '''10''' reactions in the full pathway
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{{#set: reconstruction tool=pathwaytools}}
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* [[PWY-7900]]
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{{#set: reconstruction comment=n.a}}
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** '''2''' reactions found over '''8''' reactions in the full pathway
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{{#set: reconstruction source=genome}}
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* [[PWY-5067]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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{{#set: common-name=glgb}}
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=10.936132    }}
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{{#set: left-end-position=420276}}
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{{#set: right-end-position=422492}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=7}}
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{{#set: nb pathway associated=4}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS01770

  • common-name:
    • glgb
  • transcription-direction:
    • positive
  • centisome-position:
    • 10.936132
  • left-end-position:
    • 420276
  • right-end-position:
    • 422492

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLYCOGENSYNTH-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-622
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7900
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-5067
    • 1 reactions found over 4 reactions in the full pathway





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