Difference between revisions of "FSU RS15260"

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(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...")
(Created page with "Category:gene == Gene FSU_RS15260 == * common-name: ** leub * transcription-direction: ** negative * centisome-position: ** 96.980255 * left-end-position: ** 3726955 *...")
 
(11 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction LUMAZINESYN-RXN ==
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== Gene FSU_RS15260 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** 6,7-dimethyl-8-ribityllumazine synthase
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** leub
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== Reaction formula ==
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* transcription-direction:
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* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS15715]]
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** 96.980255   
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* left-end-position:
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** 3726955
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* right-end-position:
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** 3728046
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[1.1.1.83-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FISUC_RS13750]]
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* [[3-ISOPROPYLMALDEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15725]]
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** Category: [[orthology]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[RXN-13158]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14986]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-18200]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-18202]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-18204]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-18206]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-18208]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-18210]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7800]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s)  ==
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* [[RXNQT-4165]]
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
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** Category: [[annotation]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6168]], flavin biosynthesis III (fungi):
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* [[RXNQT-4168]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-6167]], flavin biosynthesis II (archaea):
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** '''5''' reactions found over '''10''' reactions in the full pathway
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* [[RXNQT-4171]]
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== Reconstruction information  ==
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** Category: [[annotation]]
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[RXNQT-4174]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* LIGAND-RXN:
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* [[RXNQT-4178]]
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** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
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** Category: [[annotation]]
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* RHEA:
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
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</div>
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{{#set: ec-number=ec-2.5.1.78}}
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== Pathway(s) associated ==
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{{#set: direction=left-to-right}}
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* [[PWY0-1465]]
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{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
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** '''1''' reactions found over '''1''' reactions in the full pathway
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{{#set: nb gene associated=3}}
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* [[LEUSYN-PWY]]
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{{#set: nb pathway associated=3}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
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{{#set: reconstruction category=orthology|annotation}}
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* [[PWY-6871]]
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
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{{#set: reconstruction comment=n.a}}
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* [[PWY-7396]]
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{{#set: reconstruction source=ecoli|genome|bthetaiotaomicron}}
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWYQT-4450]]
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** '''5''' reactions found over '''30''' reactions in the full pathway
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{{#set: common-name=leub}}
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{{#set: transcription-direction=negative}}
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{{#set: centisome-position=96.980255    }}
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{{#set: left-end-position=3726955}}
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{{#set: right-end-position=3728046}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=16}}
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{{#set: nb pathway associated=5}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS15260

  • common-name:
    • leub
  • transcription-direction:
    • negative
  • centisome-position:
    • 96.980255
  • left-end-position:
    • 3726955
  • right-end-position:
    • 3728046

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-1465
    • 1 reactions found over 1 reactions in the full pathway
  • LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7396
    • 2 reactions found over 8 reactions in the full pathway
  • PWYQT-4450
    • 5 reactions found over 30 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS15260&oldid=94618"