Difference between revisions of "FSU RS02760"

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(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9] * direction: ** left-to-right == Reaction fo...")
 
(Created page with "Category:gene == Gene FSU_RS02760 == * transcription-direction: ** positive * centisome-position: ** 16.730375 * left-end-position: ** 642949 * right-end-position: **...")
 
(14 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
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== Gene FSU_RS02760 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 16.730375   
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== Reaction formula ==
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* left-end-position:
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* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
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** 642949
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS02405]]
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** 643911
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
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== Reaction(s) associated ==
 +
* [[SERINE-O-ACETTRAN-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FSU_RS05690]]
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6936]]
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* Gene: [[FSU_RS03090]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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** Category: [[orthology]]
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* [[PWY-7870]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[CYSTSYN-PWY]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* Gene: [[FSU_RS13400]]
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* [[PWY-7274]]
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** Category: [[orthology]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=positive}}
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== Pathway(s) ==
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{{#set: centisome-position=16.730375    }}
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* [[THIOREDOX-PWY]], thioredoxin pathway:
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{{#set: left-end-position=642949}}
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** '''1''' reactions found over '''2''' reactions in the full pathway
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{{#set: right-end-position=643911}}
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== Reconstruction information  ==
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{{#set: organism associated=fsucgem}}
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: nb reaction associated=1}}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: nb pathway associated=4}}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q05741 Q05741]
 
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** [http://www.uniprot.org/uniprot/P56431 P56431]
 
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** [http://www.uniprot.org/uniprot/O28718 O28718]
 
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** [http://www.uniprot.org/uniprot/P80880 P80880]
 
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** [http://www.uniprot.org/uniprot/P43496 P43496]
 
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** [http://www.uniprot.org/uniprot/P94284 P94284]
 
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** [http://www.uniprot.org/uniprot/O66790 O66790]
 
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** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
 
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** [http://www.uniprot.org/uniprot/P47348 P47348]
 
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** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
 
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** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
 
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** [http://www.uniprot.org/uniprot/O26804 O26804]
 
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** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
 
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** [http://www.uniprot.org/uniprot/P43788 P43788]
 
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** [http://www.uniprot.org/uniprot/Q58931 Q58931]
 
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** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
 
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** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
 
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** [http://www.uniprot.org/uniprot/P23160 P23160]
 
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** [http://www.uniprot.org/uniprot/P39916 P39916]
 
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** [http://www.uniprot.org/uniprot/Q39242 Q39242]
 
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** [http://www.uniprot.org/uniprot/Q39243 Q39243]
 
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** [http://www.uniprot.org/uniprot/P38816 P38816]
 
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** [http://www.uniprot.org/uniprot/Q25861 Q25861]
 
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** [http://www.uniprot.org/uniprot/P29509 P29509]
 
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** [http://www.uniprot.org/uniprot/P52213 P52213]
 
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** [http://www.uniprot.org/uniprot/Q16881 Q16881]
 
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** [http://www.uniprot.org/uniprot/P75531 P75531]
 
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** [http://www.uniprot.org/uniprot/P74746 P74746]
 
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** [http://www.uniprot.org/uniprot/P46843 P46843]
 
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** [http://www.uniprot.org/uniprot/O54535 O54535]
 
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** [http://www.uniprot.org/uniprot/Q39951 Q39951]
 
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** [http://www.uniprot.org/uniprot/Q92375 Q92375]
 
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** [http://www.uniprot.org/uniprot/P52215 P52215]
 
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** [http://www.uniprot.org/uniprot/P51978 P51978]
 
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</div>
 
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{{#set: ec-number=ec-1.8.1.9}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=4}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=ecoli|bifidobacterium|plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS02760

  • transcription-direction:
    • positive
  • centisome-position:
    • 16.730375
  • left-end-position:
    • 642949
  • right-end-position:
    • 643911

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6936
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7870
    • 1 reactions found over 4 reactions in the full pathway
  • CYSTSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7274
    • 1 reactions found over 6 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS02760&oldid=94623"