Difference between revisions of "FSU RS02760"

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(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46] * direction: ** left-to-right * common-name: ** dt...")
(Created page with "Category:gene == Gene FSU_RS02760 == * transcription-direction: ** positive * centisome-position: ** 16.730375 * left-end-position: ** 642949 * right-end-position: **...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DTDPGLUCDEHYDRAT-RXN ==
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== Gene FSU_RS02760 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 16.730375   
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* common-name:
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* left-end-position:
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** dtdp-glucose 4,6-dehydratase
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** 642949
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== Reaction formula ==
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* right-end-position:
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* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
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** 643911
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS03900]]
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* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[SERINE-O-ACETTRAN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS06780]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FSU_RS05795]]
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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== Pathway(s) associated ==
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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* [[PWY-6936]]
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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== Pathway(s) ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
 
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** '''2''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
 
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** '''2''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
 
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** '''2''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
 
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** '''2''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
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* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 
 
** '''3''' reactions found over '''5''' reactions in the full pathway
 
** '''3''' reactions found over '''5''' reactions in the full pathway
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</div>
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* [[PWY-7870]]
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== Reconstruction information  ==
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[CYSTSYN-PWY]]
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-7274]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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{{#set: transcription-direction=positive}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: centisome-position=16.730375    }}
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== External links  ==
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{{#set: left-end-position=642949}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: right-end-position=643911}}
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* RHEA:
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{{#set: organism associated=fsucgem}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
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{{#set: nb reaction associated=1}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
 
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** [http://www.uniprot.org/uniprot/P44914 P44914]
 
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** [http://www.uniprot.org/uniprot/P29782 P29782]
 
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** [http://www.uniprot.org/uniprot/P27830 P27830]
 
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** [http://www.uniprot.org/uniprot/P55294 P55294]
 
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** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
 
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** [http://www.uniprot.org/uniprot/P37759 P37759]
 
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** [http://www.uniprot.org/uniprot/P26391 P26391]
 
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** [http://www.uniprot.org/uniprot/Q59626 Q59626]
 
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** [http://www.uniprot.org/uniprot/P39630 P39630]
 
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** [http://www.uniprot.org/uniprot/P37777 P37777]
 
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** [http://www.uniprot.org/uniprot/P37761 P37761]
 
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** [http://www.uniprot.org/uniprot/Q54144 Q54144]
 
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** [http://www.uniprot.org/uniprot/Q56173 Q56173]
 
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** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 
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** [http://www.uniprot.org/uniprot/P55293 P55293]
 
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** [http://www.uniprot.org/uniprot/O66249 O66249]
 
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** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 
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** [http://www.uniprot.org/uniprot/O08246 O08246]
 
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** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 
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** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 
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</div>
 
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{{#set: ec-number=ec-4.2.1.46}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=19}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS02760

  • transcription-direction:
    • positive
  • centisome-position:
    • 16.730375
  • left-end-position:
    • 642949
  • right-end-position:
    • 643911

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6936
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7870
    • 1 reactions found over 4 reactions in the full pathway
  • CYSTSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7274
    • 1 reactions found over 6 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS02760&oldid=94623"