Difference between revisions of "FSU RS02125"

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(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12] * direction: ** left-to-right * common-name:...")
(Created page with "Category:gene == Gene FSU_RS02125 == * transcription-direction: ** positive * centisome-position: ** 12.923224 * left-end-position: ** 496640 * right-end-position: **...")
 
(9 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
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== Gene FSU_RS02125 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 12.923224   
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* common-name:
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* left-end-position:
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** aspartate--trna ligase
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** 496640
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== Reaction formula ==
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* right-end-position:
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* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
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** 498025
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS00430]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[PRPPAMIDOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS14240]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s)  ==
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* [[TRNA-CHARGING-PWY]], tRNA charging:
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Pathway(s) associated ==
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== Reconstruction information  ==
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* [[PWY-6277]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''7''' reactions found over '''5''' reactions in the full pathway
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== External links  ==
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* [[PWY-6121]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* RHEA:
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* [[PWY-6122]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-7282]]
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** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* UNIPROT:
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{{#set: transcription-direction=positive}}
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** [http://www.uniprot.org/uniprot/P56459 P56459]
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{{#set: centisome-position=12.923224    }}
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** [http://www.uniprot.org/uniprot/O26328 O26328]
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{{#set: left-end-position=496640}}
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** [http://www.uniprot.org/uniprot/O83950 O83950]
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{{#set: right-end-position=498025}}
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** [http://www.uniprot.org/uniprot/Q58950 Q58950]
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{{#set: organism associated=fsucgem}}
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** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
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{{#set: nb reaction associated=1}}
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** [http://www.uniprot.org/uniprot/O32038 O32038]
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{{#set: nb pathway associated=4}}
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** [http://www.uniprot.org/uniprot/O67589 O67589]
 
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** [http://www.uniprot.org/uniprot/P43817 P43817]
 
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** [http://www.uniprot.org/uniprot/O51402 O51402]
 
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** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 
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** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 
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** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 
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** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 
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** [http://www.uniprot.org/uniprot/O58776 O58776]
 
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** [http://www.uniprot.org/uniprot/O84546 O84546]
 
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** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 
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** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 
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** [http://www.uniprot.org/uniprot/P47282 P47282]
 
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** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 
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** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 
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** [http://www.uniprot.org/uniprot/P36429 P36429]
 
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** [http://www.uniprot.org/uniprot/P75068 P75068]
 
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** [http://www.uniprot.org/uniprot/P73851 P73851]
 
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** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 
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** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 
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** [http://www.uniprot.org/uniprot/P04802 P04802]
 
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** [http://www.uniprot.org/uniprot/P15179 P15179]
 
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** [http://www.uniprot.org/uniprot/P21889 P21889]
 
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** [http://www.uniprot.org/uniprot/P14868 P14868]
 
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** [http://www.uniprot.org/uniprot/P15178 P15178]
 
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** [http://www.uniprot.org/uniprot/O81892 O81892]
 
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** [http://www.uniprot.org/uniprot/O74407 O74407]
 
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** [http://www.uniprot.org/uniprot/O07683 O07683]
 
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</div>
 
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{{#set: ec-number=ec-6.1.1.12}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=aspartate--trna ligase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS02125

  • transcription-direction:
    • positive
  • centisome-position:
    • 12.923224
  • left-end-position:
    • 496640
  • right-end-position:
    • 498025

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6277
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7282
    • 4 reactions found over 9 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS02125&oldid=94635"