Difference between revisions of "FSU RS02125"

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(Created page with "Category:reaction == Reaction RXN-13202 == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.16 ec-6.3.4.16] * direction: ** left-to-right * common-name: ** carbamoyl-pho...")
(Created page with "Category:gene == Gene FSU_RS02125 == * transcription-direction: ** positive * centisome-position: ** 12.923224 * left-end-position: ** 496640 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-13202 ==
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== Gene FSU_RS02125 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/6.3.4.16 ec-6.3.4.16]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 12.923224   
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* common-name:
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* left-end-position:
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** carbamoyl-phosphate synthase large subunit
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** 496640
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== Reaction formula ==
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* right-end-position:
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* 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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** 498025
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS00955]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[PRPPAMIDOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS00960]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FSU_RS06080]]
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Pathway(s) associated ==
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* Gene: [[FISUC_RS14765]]
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* [[PWY-6277]]
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** Category: [[annotation]]
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** '''7''' reactions found over '''5''' reactions in the full pathway
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[PWY-6121]]
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* Gene: [[FISUC_RS14770]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-6122]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FISUC_RS04185]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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== Pathway(s)  ==
 
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* [[PWY-4984]], urea cycle:
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7282]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''4''' reactions found over '''9''' reactions in the full pathway
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== External links  ==
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{{#set: transcription-direction=positive}}
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* UNIPROT:
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{{#set: centisome-position=12.923224    }}
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** [http://www.uniprot.org/uniprot/O15829 O15829]
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{{#set: left-end-position=496640}}
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** [http://www.uniprot.org/uniprot/O15830 O15830]
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{{#set: right-end-position=498025}}
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** [http://www.uniprot.org/uniprot/P07756 P07756]
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{{#set: organism associated=fsucgem}}
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** [http://www.uniprot.org/uniprot/P31327 P31327]
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{{#set: nb reaction associated=1}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
 
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{{#set: ec-number=ec-6.3.4.16}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=carbamoyl-phosphate synthase large subunit}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS02125

  • transcription-direction:
    • positive
  • centisome-position:
    • 12.923224
  • left-end-position:
    • 496640
  • right-end-position:
    • 498025

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6277
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7282
    • 4 reactions found over 9 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS02125&oldid=94635"