Difference between revisions of "FSU RS02125"

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(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
(Created page with "Category:gene == Gene FSU_RS02125 == * transcription-direction: ** positive * centisome-position: ** 12.923224 * left-end-position: ** 496640 * right-end-position: **...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction KDPGALDOL-RXN ==
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== Gene FSU_RS02125 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
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** positive
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** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
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* centisome-position:
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* direction:
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** 12.923224   
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** left-to-right
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* left-end-position:
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* common-name:
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** 496640
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** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
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* right-end-position:
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== Reaction formula ==
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** 498025
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* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[fsucgem]]
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* Gene: [[FISUC_RS07950]]
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== Reaction(s) associated ==
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* [[PRPPAMIDOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS09880]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s)  ==
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Pathway(s) associated ==
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* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
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* [[PWY-6277]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** '''7''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7310]], D-glucosaminate degradation:
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* [[PWY-6121]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7242]], D-fructuronate degradation:
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* [[PWY-6122]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
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* [[PWY-7282]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
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{{#set: transcription-direction=positive}}
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** '''2''' reactions found over '''7''' reactions in the full pathway
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{{#set: centisome-position=12.923224    }}
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* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
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{{#set: left-end-position=496640}}
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** '''2''' reactions found over '''5''' reactions in the full pathway
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{{#set: right-end-position=498025}}
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== Reconstruction information  ==
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{{#set: organism associated=fsucgem}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb reaction associated=1}}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: nb pathway associated=4}}
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P44480 P44480]
 
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** [http://www.uniprot.org/uniprot/P0A955 P0A955]
 
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** [http://www.uniprot.org/uniprot/P00885 P00885]
 
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** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
 
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** [http://www.uniprot.org/uniprot/O25729 O25729]
 
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** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
 
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** [http://www.uniprot.org/uniprot/O83578 O83578]
 
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** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
 
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** [http://www.uniprot.org/uniprot/P50846 P50846]
 
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** [http://www.uniprot.org/uniprot/P38448 P38448]
 
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** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 
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** [http://www.uniprot.org/uniprot/P94802 P94802]
 
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{{#set: ec-number=ec-4.1.2.14|ec-4.1.2.55}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=7}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron|genome|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS02125

  • transcription-direction:
    • positive
  • centisome-position:
    • 12.923224
  • left-end-position:
    • 496640
  • right-end-position:
    • 498025

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6277
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7282
    • 4 reactions found over 9 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS02125&oldid=94635"