Difference between revisions of "FSU RS05775"

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(Created page with "Category:reaction == Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52] * direction: ** left-to-right * comm...")
(Created page with "Category:gene == Gene FSU_RS05775 == * transcription-direction: ** negative * centisome-position: ** 36.111774 * left-end-position: ** 1387777 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN ==
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== Gene FSU_RS05775 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 36.111774   
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* common-name:
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* left-end-position:
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** hpch/hpai aldolase/citrate lyase family protein
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** 1387777
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== Reaction formula ==
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* right-end-position:
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* 1 [[CPD-804]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[SUCC-S-ALD]][c]
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** 1389156
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS13400]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[2.7.7.13-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15375]]
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* [[MANNPGUANYLTRANGDP-RXN]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[MANNPISOM-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation:
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* [[PWY-5659]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-882]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''3''' reactions found over '''8''' reactions in the full pathway
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== External links  ==
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* [[PWY-3881]]
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* RHEA:
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25789 25789]
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* [[PWY-7586]]
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* LIGAND-RXN:
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
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* [[PWY-6992]]
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** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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{{#set: ec-number=ec-4.1.2.52}}
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* [[PWY-3861]]
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{{#set: direction=left-to-right}}
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** '''1''' reactions found over '''4''' reactions in the full pathway
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{{#set: common-name=hpch/hpai aldolase/citrate lyase family protein}}
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* [[MANNCAT-PWY]]
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{{#set: nb gene associated=2}}
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** '''1''' reactions found over '''1''' reactions in the full pathway
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{{#set: nb pathway associated=1}}
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* [[PWY-7456]]
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{{#set: reconstruction category=annotation}}
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** '''3''' reactions found over '''7''' reactions in the full pathway
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: transcription-direction=negative}}
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{{#set: reconstruction comment=n.a}}
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{{#set: centisome-position=36.111774    }}
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{{#set: reconstruction source=genome}}
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{{#set: left-end-position=1387777}}
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{{#set: right-end-position=1389156}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=3}}
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{{#set: nb pathway associated=8}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS05775

  • transcription-direction:
    • negative
  • centisome-position:
    • 36.111774
  • left-end-position:
    • 1387777
  • right-end-position:
    • 1389156

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5659
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-882
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-3881
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7586
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6992
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-3861
    • 1 reactions found over 4 reactions in the full pathway
  • MANNCAT-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7456
    • 3 reactions found over 7 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS05775&oldid=94652"