Difference between revisions of "FISUC RS14935"

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(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...")
(Created page with "Category:gene == Gene FISUC_RS14935 == * transcription-direction: ** positive * centisome-position: ** 95.33456 * left-end-position: ** 3663359 * right-end-position: *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction LUMAZINESYN-RXN ==
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== Gene FISUC_RS14935 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 95.33456   
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* common-name:
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* left-end-position:
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** 6,7-dimethyl-8-ribityllumazine synthase
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** 3663359
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== Reaction formula ==
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* right-end-position:
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* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
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** 3665023
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS15715]]
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* [[fsucgem]]
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** Category: [[orthology]]
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== Reaction(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[2.7.1.90-RXN]]
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* Gene: [[FISUC_RS13750]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15725]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[PWY-1042]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''8''' reactions found over '''10''' reactions in the full pathway
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** Category: [[orthology]]
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{{#set: transcription-direction=positive}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: centisome-position=95.33456    }}
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== Pathway(s) ==
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{{#set: left-end-position=3663359}}
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
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{{#set: right-end-position=3665023}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[PWY-6168]], flavin biosynthesis III (fungi):
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{{#set: nb reaction associated=1}}
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** '''7''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb pathway associated=1}}
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* [[PWY-6167]], flavin biosynthesis II (archaea):
 
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** '''5''' reactions found over '''10''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
 
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{{#set: ec-number=ec-2.5.1.78}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS14935

  • transcription-direction:
    • positive
  • centisome-position:
    • 95.33456
  • left-end-position:
    • 3663359
  • right-end-position:
    • 3665023

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-1042
    • 8 reactions found over 10 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS14935&oldid=94676"