Difference between revisions of "FSU RS04110"

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(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase == Reaction formula == * 1 CIT[c] '''<=>''' 1 C...")
(Created page with "Category:gene == Gene FSU_RS04110 == * transcription-direction: ** positive * centisome-position: ** 25.121338 * left-end-position: ** 965414 * right-end-position: **...")
 
(12 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACONITATEDEHYDR-RXN ==
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== Gene FSU_RS04110 ==
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* direction:
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* transcription-direction:
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** reversible
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** positive
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* common-name:
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* centisome-position:
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** aconitate hydratase
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** 25.121338   
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== Reaction formula ==
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* left-end-position:
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* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
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** 965414
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FISUC_RS00920]]
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** 966274
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[TRNA-S-TRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02800]]
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{{#set: transcription-direction=positive}}
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** Category: [[annotation]]
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{{#set: centisome-position=25.121338    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=965414}}
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** Category: [[orthology]]
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{{#set: right-end-position=966274}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: organism associated=fsucgem}}
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction associated=1}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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== Pathway(s)  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6549]], L-glutamine biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6728]], methylaspartate cycle:
 
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** '''9''' reactions found over '''19''' reactions in the full pathway
 
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* [[P23-PWY]], reductive TCA cycle I:
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
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** '''7''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5392]], reductive TCA cycle II:
 
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** '''8''' reactions found over '''12''' reactions in the full pathway
 
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* [[TCA]], TCA cycle I (prokaryotic):
 
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5690]], TCA cycle II (plants and fungi):
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY66-398]], TCA cycle III (animals):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
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** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[FERMENTATION-PWY]], mixed acid fermentation:
 
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** '''14''' reactions found over '''16''' reactions in the full pathway
 
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</div>
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
 
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* PIR:
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P16276 P16276]
 
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** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 
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** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 
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** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 
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** [http://www.uniprot.org/uniprot/P37032 P37032]
 
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** [http://www.uniprot.org/uniprot/P81291 P81291]
 
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** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 
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** [http://www.uniprot.org/uniprot/P36683 P36683]
 
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** [http://www.uniprot.org/uniprot/O53166 O53166]
 
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** [http://www.uniprot.org/uniprot/P25516 P25516]
 
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** [http://www.uniprot.org/uniprot/P09339 P09339]
 
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** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 
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** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 
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** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 
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** [http://www.uniprot.org/uniprot/P28271 P28271]
 
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** [http://www.uniprot.org/uniprot/P21399 P21399]
 
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** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 
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** [http://www.uniprot.org/uniprot/P19414 P19414]
 
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** [http://www.uniprot.org/uniprot/P20004 P20004]
 
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** [http://www.uniprot.org/uniprot/P49609 P49609]
 
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** [http://www.uniprot.org/uniprot/P74582 P74582]
 
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** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
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** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
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** [http://www.uniprot.org/uniprot/O04916 O04916]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=aconitate hydratase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=15}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|genome|bifidobacterium|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS04110

  • transcription-direction:
    • positive
  • centisome-position:
    • 25.121338
  • left-end-position:
    • 965414
  • right-end-position:
    • 966274

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS04110&oldid=94683"