Difference between revisions of "FSU RS04110"

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(Created page with "Category:reaction == Reaction ASPDECARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.11 ec-4.1.1.11] * direction: ** left-to-right * common-name: ** asparta...")
(Created page with "Category:gene == Gene FSU_RS04110 == * transcription-direction: ** positive * centisome-position: ** 25.121338 * left-end-position: ** 965414 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ASPDECARBOX-RXN ==
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== Gene FSU_RS04110 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.1.11 ec-4.1.1.11]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 25.121338   
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* common-name:
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* left-end-position:
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** aspartate 1-decarboxylase
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** 965414
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== Reaction formula ==
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* right-end-position:
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* 1 [[L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[B-ALANINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 966274
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS02275]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[TRNA-S-TRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS04165]]
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{{#set: transcription-direction=positive}}
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** Category: [[annotation]]
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{{#set: centisome-position=25.121338    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=965414}}
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** Category: [[orthology]]
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{{#set: right-end-position=966274}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: organism associated=fsucgem}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction associated=1}}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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== Pathway(s)  ==
 
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* [[PWY-5155]], β-alanine biosynthesis III:
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19498 19498]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00489 R00489]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P52999 P52999]
 
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** [http://www.uniprot.org/uniprot/O66773 O66773]
 
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** [http://www.uniprot.org/uniprot/Q9JZ56 Q9JZ56]
 
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** [http://www.uniprot.org/uniprot/P56065 P56065]
 
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** [http://www.uniprot.org/uniprot/P65660 P65660]
 
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** [http://www.uniprot.org/uniprot/P0A790 P0A790]
 
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** [http://www.uniprot.org/uniprot/Q9X037 Q9X037]
 
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** [http://www.uniprot.org/uniprot/Q9ZN30 Q9ZN30]
 
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** [http://www.uniprot.org/uniprot/Q9PIK3 Q9PIK3]
 
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** [http://www.uniprot.org/uniprot/Q9JU49 Q9JU49]
 
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** [http://www.uniprot.org/uniprot/Q9RWF1 Q9RWF1]
 
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** [http://www.uniprot.org/uniprot/Q55382 Q55382]
 
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{{#set: ec-number=ec-4.1.1.11}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=aspartate 1-decarboxylase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum|genome|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS04110

  • transcription-direction:
    • positive
  • centisome-position:
    • 25.121338
  • left-end-position:
    • 965414
  • right-end-position:
    • 966274

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS04110&oldid=94683"