Difference between revisions of "FISUC RS12770"

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(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:gene == Gene FISUC_RS12770 == * transcription-direction: ** positive * centisome-position: ** 81.6853 * left-end-position: ** 3138868 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DTDPKIN-RXN ==
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== Gene FISUC_RS12770 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 81.6853   
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* common-name:
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* left-end-position:
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** nucleoside-diphosphate kinase
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** 3138868
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== Reaction formula ==
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* right-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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** 3141399
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS14500]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[RXN0-4261]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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{{#set: transcription-direction=positive}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: centisome-position=81.6853    }}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=3138868}}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: right-end-position=3141399}}
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* Gene: [[FISUC_RS12530]]
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{{#set: organism associated=fsucgem}}
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** Category: [[annotation]]
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{{#set: nb reaction associated=1}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS15240]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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== Pathway(s)  ==
 
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
 
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{{#set: ec-number=ec-2.7.4.6}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=nucleoside-diphosphate kinase}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=7}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|plantarum|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12770

  • transcription-direction:
    • positive
  • centisome-position:
    • 81.6853
  • left-end-position:
    • 3138868
  • right-end-position:
    • 3141399

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12770&oldid=94699"