Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction SULFATE-ADENYLYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.4 ec-2.7.7.4] * direction: ** reversible * common-name: ** su...")
 
(Created page with "Category:gene == Gene FISUC_RS12545 == * transcription-direction: ** positive * centisome-position: ** 80.33128 * left-end-position: ** 3086838 * right-end-position: *...")
 
(14 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction SULFATE-ADENYLYLTRANS-RXN ==
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== Gene FISUC_RS12545 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.7.4 ec-2.7.7.4]
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** positive
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* direction:
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* centisome-position:
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** reversible
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** 80.33128   
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* common-name:
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* left-end-position:
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** sulfate adenylyltransferase subunit cysd
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** 3086838
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** sulfate adenylyltransferase
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* right-end-position:
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== Reaction formula ==
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** 3087614
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* 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFATE]][c] '''<=>''' 1 [[APS]][c] '''+''' 1 [[PPI]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[fsucgem]]
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* Gene: [[FSU_RS02630]]
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== Reaction(s) associated ==
 +
* [[R601-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-14963]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS02625]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-14971]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS00750]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS00745]]
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* [[RXN-15378]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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* [[PWY-6683]], assimilatory sulfate reduction III:
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** Category: [[annotation]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[DISSULFRED-PWY]], dissimilatory sulfate reduction I (to hydrogen sufide)):
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FERMENTATION-PWY]]
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
* [[P23-PWY]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P42-PWY]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[P108-PWY]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-1576]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1336]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[REDCITCYC]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1582]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-561]]
 +
** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[TCA]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6728]]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-3781]]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[SULFMETII-PWY]], assimilatory sulfate reduction II:
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* [[PWY0-1353]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5278]], sulfite oxidation III:
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* [[PWY0-1329]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5340]], sulfate activation for sulfonation:
 
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[P224-PWY]], dissimilatory sulfate reduction II (to thiosulfate):
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* [[PWY-7279]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-4302]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY66-398]]
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== External links  ==
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** '''7''' reactions found over '''11''' reactions in the full pathway
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18136 18136]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00529 R00529]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q12650 Q12650]
 
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** [http://www.uniprot.org/uniprot/O33581 O33581]
 
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** [http://www.uniprot.org/uniprot/O34764 O34764]
 
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** [http://www.uniprot.org/uniprot/Q10600 Q10600]
 
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** [http://www.uniprot.org/uniprot/O67174 O67174]
 
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** [http://www.uniprot.org/uniprot/P21156 P21156]
 
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** [http://www.uniprot.org/uniprot/O23324 O23324]
 
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** [http://www.uniprot.org/uniprot/Q9JUD7 Q9JUD7]
 
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** [http://www.uniprot.org/uniprot/Q9PM66 Q9PM66]
 
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** [http://www.uniprot.org/uniprot/Q9JUD6 Q9JUD6]
 
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** [http://www.uniprot.org/uniprot/P28604 P28604]
 
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** [http://www.uniprot.org/uniprot/Q27128 Q27128]
 
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** [http://www.uniprot.org/uniprot/P23845 P23845]
 
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** [http://www.uniprot.org/uniprot/O43252 O43252]
 
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** [http://www.uniprot.org/uniprot/Q43170 Q43170]
 
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** [http://www.uniprot.org/uniprot/Q43183 Q43183]
 
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** [http://www.uniprot.org/uniprot/Q43870 Q43870]
 
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** [http://www.uniprot.org/uniprot/Q12555 Q12555]
 
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** [http://www.uniprot.org/uniprot/P08536 P08536]
 
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** [http://www.uniprot.org/uniprot/P74241 P74241]
 
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** [http://www.uniprot.org/uniprot/O48888 O48888]
 
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** [http://www.uniprot.org/uniprot/Q39595 Q39595]
 
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** [http://www.uniprot.org/uniprot/Q96349 Q96349]
 
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** [http://www.uniprot.org/uniprot/Q96541 Q96541]
 
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** [http://www.uniprot.org/uniprot/Q9S7D8 Q9S7D8]
 
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** [http://www.uniprot.org/uniprot/P13441 P13441]
 
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** [http://www.uniprot.org/uniprot/P13442 P13442]
 
 
</div>
 
</div>
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{{#set: ec-number=ec-2.7.7.4}}
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{{#set: transcription-direction=positive}}
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{{#set: direction=reversible}}
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{{#set: centisome-position=80.33128    }}
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{{#set: common-name=sulfate adenylyltransferase|sulfate adenylyltransferase subunit cysd}}
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{{#set: left-end-position=3086838}}
−
{{#set: nb gene associated=4}}
+
{{#set: right-end-position=3087614}}
−
{{#set: nb pathway associated=6}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb reaction associated=6}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: nb pathway associated=23}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12545

  • transcription-direction:
    • positive
  • centisome-position:
    • 80.33128
  • left-end-position:
    • 3086838
  • right-end-position:
    • 3087614

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-1576
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1336
    • 1 reactions found over 2 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY0-1582
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-3781
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4302
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=94704"