Difference between revisions of "FISUC RS00920"

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(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direction: ** left-to-right == Reaction formula ==...")
(Created page with "Category:gene == Gene FISUC_RS00920 == * transcription-direction: ** positive * centisome-position: ** 5.422633 * left-end-position: ** 208372 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction OXALODECARB-RXN ==
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== Gene FISUC_RS00920 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 5.422633   
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== Reaction formula ==
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* left-end-position:
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* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
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** 208372
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS09880]]
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** 210645
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** Category: [[orthology]]
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== Organism(s) associated with this gene  ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fsucgem]]
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* Gene: [[FSU_RS09935]]
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== Reaction(s) associated ==
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** Category: [[orthology]]
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* [[ACONITATEDEHYDR-RXN]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[ACONITATEHYDR-RXN]]
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* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
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** Category: [[annotation]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6339]], syringate degradation:
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* [[RXN-14047]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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** Category: [[annotation]]
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* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''1''' reactions found over '''6''' reactions in the full pathway
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== Pathway(s) associated ==
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== Reconstruction information  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-7254]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5690]]
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== External links  ==
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* RHEA:
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* [[PWY66-398]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-5913]]
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** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* UNIPROT:
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* [[REDCITCYC]]
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** [http://www.uniprot.org/uniprot/P13187 P13187]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P13155 P13155]
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* [[PWY-6969]]
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** [http://www.uniprot.org/uniprot/P13156 P13156]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q58628 Q58628]
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* [[P105-PWY]]
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{{#set: ec-number=ec-4.1.1.112}}
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** '''8''' reactions found over '''11''' reactions in the full pathway
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{{#set: direction=left-to-right}}
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* [[FERMENTATION-PWY]]
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{{#set: nb gene associated=2}}
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** '''14''' reactions found over '''16''' reactions in the full pathway
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{{#set: nb pathway associated=3}}
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* [[GLYOXYLATE-BYPASS]]
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{{#set: reconstruction category=orthology}}
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** '''4''' reactions found over '''6''' reactions in the full pathway
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{{#set: reconstruction tool=orthofinder}}
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* [[PWY-6549]]
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{{#set: reconstruction comment=n.a}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: reconstruction source=bthetaiotaomicron|ecoli|faecalibacterium}}
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* [[PWY-6728]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[P23-PWY]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7124]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5392]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[TCA]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=5.422633    }}
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{{#set: left-end-position=208372}}
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{{#set: right-end-position=210645}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=3}}
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{{#set: nb pathway associated=15}}

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS00920

  • transcription-direction:
    • positive
  • centisome-position:
    • 5.422633
  • left-end-position:
    • 208372
  • right-end-position:
    • 210645

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • GLYOXYLATE-BYPASS
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS00920&oldid=94713"