Difference between revisions of "FSU RS13360"

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(Created page with "Category:reaction == Reaction COBINPGUANYLYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62] * direction: ** left-to-right == Reaction formu...")
(Created page with "Category:gene == Gene FSU_RS13360 == * transcription-direction: ** positive * centisome-position: ** 84.28604 * left-end-position: ** 3239116 * right-end-position: **...")
 
(8 intermediate revisions by one other user not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction COBINPGUANYLYLTRANS-RXN ==
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== Gene FSU_RS13360 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 84.28604   
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== Reaction formula ==
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* left-end-position:
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* 1 [[ADENOSYLCOBINAMIDE-P]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE-GDP]][c] '''+''' 1 [[PPI]][c]
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** 3239116
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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== Pathway(s)  ==
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** 3239835
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* [[PWY-7972]], adenosylcobinamideGDP salvage from cobinamide II:
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[LIPIDXSYNTHESIS-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s) associated ==
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* [[NAGLIPASYN-PWY]]
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II:
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{{#set: transcription-direction=positive}}
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** '''8''' reactions found over '''6''' reactions in the full pathway
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{{#set: centisome-position=84.28604    }}
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* [[PWY-7962]], adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide:
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{{#set: left-end-position=3239116}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
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{{#set: right-end-position=3239835}}
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* [[PWY-7971]], adenosylcobinamide-GDP salvage from cobinamide I:
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{{#set: organism associated=fsucgem}}
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** '''5''' reactions found over '''5''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I:
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{{#set: nb pathway associated=1}}
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** '''7''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[manual]]; source: [[reactions_add_adenosylcobalamin]]; tool: [[curation]]; comment: added to reach adenosylcobinamide-gdp
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22712 22712]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05222 R05222]
 
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{{#set: ec-number=ec-2.7.7.62}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=0}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=manual}}
 
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{{#set: reconstruction tool=curation}}
 
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{{#set: reconstruction comment=added to reach adenosylcobinamide-gdp}}
 
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{{#set: reconstruction source=reactions_add_adenosylcobalamin}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS13360

  • transcription-direction:
    • positive
  • centisome-position:
    • 84.28604
  • left-end-position:
    • 3239116
  • right-end-position:
    • 3239835

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13360&oldid=94717"