Difference between revisions of "FSU RS13360"

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(Created page with "Category:reaction == Reaction ARGSUCCINLYA-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.3.2.1 ec-4.3.2.1] * direction: ** reversible * common-name: ** argininosuc...")
(Created page with "Category:gene == Gene FSU_RS13360 == * transcription-direction: ** positive * centisome-position: ** 84.28604 * left-end-position: ** 3239116 * right-end-position: **...")
 
(3 intermediate revisions by one other user not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ARGSUCCINLYA-RXN ==
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== Gene FSU_RS13360 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.3.2.1 ec-4.3.2.1]
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** positive
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* direction:
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* centisome-position:
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** reversible
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** 84.28604   
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* common-name:
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* left-end-position:
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** argininosuccinate lyase
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** 3239116
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== Reaction formula ==
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* right-end-position:
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* 1 [[L-ARGININO-SUCCINATE]][c] '''<=>''' 1 [[ARG]][c] '''+''' 1 [[FUM]][c]
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** 3239835
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS01345]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[LIPIDXSYNTHESIS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS15155]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s)  ==
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== Pathway(s) associated ==
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* [[PWY-4983]], nitric oxide biosynthesis II (mammals):
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* [[NAGLIPASYN-PWY]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
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{{#set: transcription-direction=positive}}
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** '''7''' reactions found over '''9''' reactions in the full pathway
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{{#set: centisome-position=84.28604    }}
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* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
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{{#set: left-end-position=3239116}}
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** '''5''' reactions found over '''4''' reactions in the full pathway
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{{#set: right-end-position=3239835}}
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* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
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{{#set: organism associated=fsucgem}}
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** '''7''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
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{{#set: nb pathway associated=1}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-4984]], urea cycle:
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24023 24023]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01086 R01086]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P50987 P50987]
 
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** [http://www.uniprot.org/uniprot/Q46104 Q46104]
 
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** [http://www.uniprot.org/uniprot/P11447 P11447]
 
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** [http://www.uniprot.org/uniprot/Q9JVG7 Q9JVG7]
 
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** [http://www.uniprot.org/uniprot/Q9CJ76 Q9CJ76]
 
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** [http://www.uniprot.org/uniprot/P44314 P44314]
 
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** [http://www.uniprot.org/uniprot/Q58201 Q58201]
 
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** [http://www.uniprot.org/uniprot/P33110 P33110]
 
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** [http://www.uniprot.org/uniprot/Q01592 Q01592]
 
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** [http://www.uniprot.org/uniprot/P40369 P40369]
 
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** [http://www.uniprot.org/uniprot/P50988 P50988]
 
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** [http://www.uniprot.org/uniprot/P73257 P73257]
 
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** [http://www.uniprot.org/uniprot/P50514 P50514]
 
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** [http://www.uniprot.org/uniprot/P04076 P04076]
 
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** [http://www.uniprot.org/uniprot/P04424 P04424]
 
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** [http://www.uniprot.org/uniprot/P20673 P20673]
 
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</div>
 
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{{#set: ec-number=ec-4.3.2.1}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=argininosuccinate lyase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=6}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS13360

  • transcription-direction:
    • positive
  • centisome-position:
    • 84.28604
  • left-end-position:
    • 3239116
  • right-end-position:
    • 3239835

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13360&oldid=94717"