|
|
| (3 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction PYRUVFORMLY-RXN == | + | == Gene FISUC_RS13965 == |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54]
| |
| − | * direction:
| |
| − | ** reversible
| |
| | * common-name: | | * common-name: |
| − | ** formate c-acetyltransferase | + | ** tils |
| − | == Reaction formula == | + | * transcription-direction: |
| − | * 1 [[ACETYL-COA]][c] '''+''' 1 [[FORMATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c] | + | ** negative |
| − | == Gene(s) associated with this reaction == | + | * centisome-position: |
| − | * Gene: [[FISUC_RS05215]] | + | ** 89.29196 |
| | + | * left-end-position: |
| | + | ** 3431164 |
| | + | * right-end-position: |
| | + | ** 3432345 |
| | + | == Organism(s) associated with this gene == |
| | + | * [[fsucgem]] |
| | + | == Reaction(s) associated == |
| | + | * [[RXN-1961]] |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | *** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a |
| − | * Gene: [[FSU_RS07120]]
| + | {{#set: common-name=tils}} |
| − | ** Category: [[orthology]]
| + | {{#set: transcription-direction=negative}} |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: centisome-position=89.29196 }} |
| − | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: left-end-position=3431164}} |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: right-end-position=3432345}} |
| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: organism associated=fsucgem}} |
| − | * Gene: [[FSU_RS07105]]
| + | {{#set: nb reaction associated=1}} |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) ==
| |
| − | * [[FERMENTATION-PWY]], mixed acid fermentation:
| |
| − | ** '''14''' reactions found over '''16''' reactions in the full pathway
| |
| − | * [[PWY-5480]], pyruvate fermentation to ethanol I:
| |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-5493]], reductive monocarboxylic acid cycle:
| |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY-5485]], pyruvate fermentation to acetate IV:
| |
| − | ** '''4''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
| |
| − | ** '''9''' reactions found over '''7''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11847 11847]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00212 R00212]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P32674 P32674]
| |
| − | ** [http://www.uniprot.org/uniprot/O26446 O26446]
| |
| − | ** [http://www.uniprot.org/uniprot/P75793 P75793]
| |
| − | ** [http://www.uniprot.org/uniprot/P42632 P42632]
| |
| − | ** [http://www.uniprot.org/uniprot/O28823 O28823]
| |
| − | ** [http://www.uniprot.org/uniprot/O32797 O32797]
| |
| − | ** [http://www.uniprot.org/uniprot/Q46266 Q46266]
| |
| − | ** [http://www.uniprot.org/uniprot/P09373 P09373]
| |
| − | ** [http://www.uniprot.org/uniprot/P37836 P37836]
| |
| − | {{#set: ec-number=ec-2.3.1.54}} | |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=formate c-acetyltransferase}} | |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=5}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|orthofinder}} | |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
| |
