Difference between revisions of "FISUC RS07845"

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(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1] * direction: ** left-to-right == Reaction formula...")
 
(Created page with "Category:gene == Gene FISUC_RS07845 == * common-name: ** glmm * transcription-direction: ** positive * centisome-position: ** 49.971233 * left-end-position: ** 1920212...")
 
(11 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACETATE--COA-LIGASE-RXN ==
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== Gene FISUC_RS07845 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
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** glmm
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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== Reaction formula ==
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* centisome-position:
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* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** 49.971233   
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== Gene(s) associated with this reaction  ==
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* left-end-position:
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* Gene: [[FSU_RS01410]]
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** 1920212
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** Category: [[orthology]]
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* right-end-position:
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** 1921552
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* Gene: [[FISUC_RS15220]]
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== Organism(s) associated with this gene  ==
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** Category: [[orthology]]
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* [[fsucgem]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) associated ==
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== Pathway(s)  ==
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* [[5.4.2.10-RXN]]
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* [[PWY-7118]], chitin degradation to ethanol:
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** Category: [[annotation]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY0-1313]], acetate conversion to acetyl-CoA:
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* [[RXN-16424]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY66-21]], ethanol degradation II:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN0-7139]]
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* [[PWY66-162]], ethanol degradation IV:
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** Category: [[annotation]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY66-161]], ethanol degradation III:
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== Pathway(s) associated ==
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[UDPNAGSYN-PWY]]
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* [[PWY-6672]], cis-genanyl-CoA degradation:
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-1261]]
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== Reconstruction information  ==
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-6749]]
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== External links  ==
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** '''2''' reactions found over '''10''' reactions in the full pathway
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=glmm}}
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* RHEA:
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{{#set: transcription-direction=positive}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
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{{#set: centisome-position=49.971233    }}
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* LIGAND-RXN:
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{{#set: left-end-position=1920212}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
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{{#set: right-end-position=1921552}}
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* UNIPROT:
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{{#set: organism associated=fsucgem}}
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** [http://www.uniprot.org/uniprot/P27095 P27095]
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{{#set: nb reaction associated=3}}
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** [http://www.uniprot.org/uniprot/P31638 P31638]
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{{#set: nb pathway associated=3}}
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** [http://www.uniprot.org/uniprot/Q12662 Q12662]
 
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** [http://www.uniprot.org/uniprot/P28812 P28812]
 
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** [http://www.uniprot.org/uniprot/P27550 P27550]
 
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** [http://www.uniprot.org/uniprot/O34613 O34613]
 
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** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
 
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** [http://www.uniprot.org/uniprot/P36333 P36333]
 
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** [http://www.uniprot.org/uniprot/Q01574 Q01574]
 
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** [http://www.uniprot.org/uniprot/P39062 P39062]
 
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** [http://www.uniprot.org/uniprot/Q01576 Q01576]
 
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** [http://www.uniprot.org/uniprot/P52910 P52910]
 
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** [http://www.uniprot.org/uniprot/Q55404 Q55404]
 
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** [http://www.uniprot.org/uniprot/P16928 P16928]
 
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** [http://www.uniprot.org/uniprot/P16929 P16929]
 
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** [http://www.uniprot.org/uniprot/O68040 O68040]
 
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** [http://www.uniprot.org/uniprot/P78773 P78773]
 
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</div>
 
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{{#set: ec-number=ec-6.2.1.1}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=6}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS07845

  • common-name:
    • glmm
  • transcription-direction:
    • positive
  • centisome-position:
    • 49.971233
  • left-end-position:
    • 1920212
  • right-end-position:
    • 1921552

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • UDPNAGSYN-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1261
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-6749
    • 2 reactions found over 10 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS07845&oldid=94738"